Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F23
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    32   0.11 
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   4.1  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    27   4.1  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -3

Query: 727 GGPIMDLEXRENFLSTKRRRDGTSWGDSFHTYSVQWTPDFIALSVDGEEWARVEAPRDAL 548
           GGP+  +   +N     R RD   WG+  +  +   T D  A+   G EW + E   DA+
Sbjct: 363 GGPLETVIDGKN--GWLRPRDAKIWGNVIYEATTSTTYDTAAMGEAGSEWVKNEFSTDAM 420


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 396 LVTPPEVIDPSRNSVMPPAATPSVM 470
           +VTPP  +    +S  PPAATP+ +
Sbjct: 202 IVTPPITVTAVPDSPNPPAATPATV 226


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 513 CRPARRWRH 487
           CRPA+RWRH
Sbjct: 49  CRPAKRWRH 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,727
Number of Sequences: 5004
Number of extensions: 53101
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)