Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F23
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical...    29   3.9  
AF067608-14|AAK95864.1|  551|Caenorhabditis elegans Hypothetical...    29   3.9  
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    29   3.9  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical pr...    28   8.9  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   8.9  
AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical
           protein B0511.14b protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 419 YNLRGSHQALERQRSEGIRTFLAAHV 342
           YNLRGS +AL+ +R   +R  +AA++
Sbjct: 129 YNLRGSERALDGRREPSVREEIAANM 154


>AF067608-14|AAK95864.1|  551|Caenorhabditis elegans Hypothetical
           protein B0511.14a protein.
          Length = 551

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 419 YNLRGSHQALERQRSEGIRTFLAAHV 342
           YNLRGS +AL+ +R   +R  +AA++
Sbjct: 129 YNLRGSERALDGRREPSVREEIAANM 154


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
            protein B0511.12 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 347  VPPEMYGCLPSAVSPGLGDSPGGYRP 424
            VPP M   +PSA   G+  +PGG  P
Sbjct: 1285 VPPVMQITIPSATPSGISSAPGGPNP 1310


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 363 TDAFRALSLQ--GLVTPPEVIDPSRNSVMPPAATPSVM*KWSSNGAICEPACSRCR 524
           T+AF + + Q  GL+ P + ++PS +  +PP+  P         GA+C+ + +  R
Sbjct: 133 TNAFVSSTSQCSGLIPPTQPVNPSVSPSVPPSNMPPTTTAPMKLGAVCDSSSTPFR 188


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 337  NRTCAARNVRMPSERCLSRAW 399
            N+ CA   VR PS RC+   W
Sbjct: 2958 NQQCAQHYVRCPSGRCIPETW 2978


>Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 611 IRCPLNGICMKTVAPRRAVSASFCGE 688
           IRCPL+ +  K     R +SAS C +
Sbjct: 54  IRCPLSAVSSKMDTTTRNISASICSD 79


>Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 611 IRCPLNGICMKTVAPRRAVSASFCGE 688
           IRCPL+ +  K     R +SAS C +
Sbjct: 54  IRCPLSAVSSKMDTTTRNISASICSD 79


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 337  NRTCAARNVRMPSERCLSRAW 399
            N+ CA   VR PS RC+   W
Sbjct: 2958 NQQCAQHYVRCPSGRCIPETW 2978


>AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical
           protein C50A2.3 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 350 PPEMYGCLPSAVSPGLGDSPGGYRPVAELRYASCRH 457
           PP  Y  +   ++PG   +P G RP++  R    +H
Sbjct: 97  PPPFYSDIGKEIAPGFRTTPSGARPMSMNRQFQNQH 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,062
Number of Sequences: 27780
Number of extensions: 330659
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)