Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F23
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 422 VYNLRGSHQALERQRSEGIRTFLAAHVRLVPTVESANFNR 303
           + N R      ERQR++ +    AA  +++PT+ S   ++
Sbjct: 251 IQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSK 290


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -3

Query: 559 RDALPAVCAHAPRHLLQAGSQMAPFDDHFYITLGVAAGGITEFR 428
           +D +P      P+H      ++ P+ +  + T+G   G  + FR
Sbjct: 207 KDGIPVTLTTVPKHSKTKSPKLRPYPNWEWHTVGNCDGLTSVFR 250


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -3

Query: 697 ENFLSTKRRRDGTSWGDSFHTYSVQWTPD 611
           E   + KR R   +WG   + Y    TP+
Sbjct: 199 ETLKAAKRMRPAANWGYYAYPYCYNLTPN 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,235
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)