Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F22
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.99 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   4.0  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 183 VNTPMHWYATFYGSINNRLRNSDGLN 106
           + TP H  AT YG+++N  R+++G++
Sbjct: 913 IYTPSHAQATLYGNMDNNDRDNEGIH 938


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 426 ILSVLKSFPGSICFGNHHL 482
           +LS+++ + GS+C GN H+
Sbjct: 726 LLSIIQKYIGSLCIGNEHV 744


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 342 VMCTF*HVTVAIISVATGTVRMPILVAVILSVLKSFPGSICF 467
           V CTF H  + ++ ++   V   IL A  LS L     SIC+
Sbjct: 40  VFCTFNHPNMGLVLISFAKVDGHILAAYALSKLGPDTFSICY 81


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 375 IISVATGTV-RMPILVAVILSVLKSFPGSICFGNHHLG 485
           I ++  GTV R PIL+  I   +  +   IC G H  G
Sbjct: 109 IRNILNGTVFREPILIKNIPKYIPGWTNPICIGRHAFG 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,565
Number of Sequences: 5004
Number of extensions: 48860
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)