Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_F22
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0485 + 24133312-24133585,24136352-24136492,24136593-241367... 31 0.78
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 31 0.78
01_06_1194 - 35313132-35313154,35314462-35314604,35314751-353154... 31 1.4
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 30 1.8
09_02_0082 - 4060018-4061604 29 4.2
04_03_0934 - 20912932-20912997,20913131-20913172,20913477-209138... 28 7.3
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 28 9.6
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 9.6
01_01_0070 - 542603-542686,542803-543441 28 9.6
>11_06_0485 +
24133312-24133585,24136352-24136492,24136593-24136742,
24136837-24136955,24137062-24137146,24137218-24137264,
24137422-24137520
Length = 304
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +3
Query: 204 DLLV*C*ARGGRDAPRVAPRGAPLPRPLYPPWXAVAFSIPL 326
DL + C GGR AP A G L PPW VA + L
Sbjct: 5 DLPIPCSGAGGRRAPAAAADGRLAGGVLRPPWGGVAAGVRL 45
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 255 APRGAPLPRPLYPPWXAVAFSIPLTTVLGVMCTF*HVTVAIISVATGTV 401
AP GAP+P P+Y P A A+ + GV A + A G V
Sbjct: 68 APYGAPVPFPMYHPGAAAAYYAHASMAAGVPYPTAEAMAAAAAAAAGAV 116
>01_06_1194 -
35313132-35313154,35314462-35314604,35314751-35315444,
35315746-35315895,35316011-35316419
Length = 472
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 234 GRDAPRVAPRGAPLPRPLYPPWXAVAFSIPLTTVLGVMCTF*HVTVAIISVATGTVRMP 410
GR+A VA LP L ++ F+ ++ +L V+ F + +A+ ++ TGT +MP
Sbjct: 165 GREAVLVAAAVLLLPLVLRKRVDSLKFTSAVSILLAVVFMFISLGIAVYALFTGTAKMP 223
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 472 LPKQIEPGKDFKTDNMTATKIGMRTVP-VATDIMATVTCQKVHITPRTV 329
LP +EPGK T KI T P + + V C VH P T+
Sbjct: 68 LPDLVEPGKTKITTLANGVKIASETTPGPSCSVGVYVNCGSVHEAPETL 116
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/82 (24%), Positives = 28/82 (34%)
Frame = +1
Query: 160 IPMHWCVHLTIQHYRISLCSVERGEAETHRVXXXXXXXYRVPCILPGKPLPSPYRSRPFS 339
+P+ + V LT HY A P + + L P P
Sbjct: 366 VPLGFIVSLTTTHYNFGYGGASLSSAMPRATTAPLALRGPAPHLRVPRMLAPPIPMPPAP 425
Query: 340 A*CAPSDTSPLP*YPSPPVRFA 405
A P+ + P P P+PPV A
Sbjct: 426 APPVPTPSMPSPTVPAPPVTAA 447
>04_03_0934 -
20912932-20912997,20913131-20913172,20913477-20913845,
20913949-20914080
Length = 202
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 243 APRVAPRGAPLPRPLYPP 296
+PR AP GAP P P PP
Sbjct: 66 SPRPAPFGAPAPAPAIPP 83
>08_02_1416 -
26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 710 PVLQEDTSPVSPVTDKEDDCRKDGPSPE 627
P+L E S SP E+ C DGP PE
Sbjct: 861 PLLVELGSGTSPNKKNEEKCAADGPYPE 888
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 295 PGKPLPSPYRSRPFSA*CAPSDTSPLP*YPSPPVR 399
PG P P+ + PF P P P YP PP++
Sbjct: 410 PGLP-PAQMQMAPFGVPPGPPPMLPPPFYPGPPIQ 443
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 283 PCILPGKPLPSPYRSRPFSA*CAPSDTSPLP*YPSPPV 396
P P +P P+P + P + AP+ +P P+PPV
Sbjct: 29 PAAAPAQPTPTPVPTAPAKSPPAPATPAPTA-TPTPPV 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,231
Number of Sequences: 37544
Number of extensions: 387082
Number of successful extensions: 1431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -