Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F19
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918...    40   0.002
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    40   0.003
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    40   0.003
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    37   0.016
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436...    28   9.7  

>07_03_0994 +
           23190344-23190456,23191367-23191581,23191663-23191862,
           23192420-23192928,23193048-23193363
          Length = 450

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 31/117 (26%), Positives = 35/117 (29%)
 Frame = -2

Query: 625 KXXPLXXKKXGXXXXTRGXXXPKXVKXPXXTXKTKXXXQFXEGXPXGLKGGXKNXXPPXG 446
           K  P   K        RG   PK V     T KTK   QF +  P G K G     P   
Sbjct: 304 KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVV 363

Query: 445 PXGXXXKVXRPXXXXSKXPPXPKIGXXXXXXXXXXXPXGVFXXXKXGXGXXXGXFSK 275
           P G   KV R     S      ++                F     G G   G FS+
Sbjct: 364 PGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 31/117 (26%), Positives = 35/117 (29%)
 Frame = -2

Query: 625 KXXPLXXKKXGXXXXTRGXXXPKXVKXPXXTXKTKXXXQFXEGXPXGLKGGXKNXXPPXG 446
           K  P   K        RG   PK V     T KTK   QF +  P G K G     P   
Sbjct: 304 KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVV 363

Query: 445 PXGXXXKVXRPXXXXSKXPPXPKIGXXXXXXXXXXXPXGVFXXXKXGXGXXXGXFSK 275
           P G   KV R     S      ++                F     G G   G FS+
Sbjct: 364 PGGDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSE 420


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 31/117 (26%), Positives = 35/117 (29%)
 Frame = -2

Query: 625 KXXPLXXKKXGXXXXTRGXXXPKXVKXPXXTXKTKXXXQFXEGXPXGLKGGXKNXXPPXG 446
           K  P   K        RG   PK V     T KTK   QF +  P G K G     P   
Sbjct: 304 KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVV 363

Query: 445 PXGXXXKVXRPXXXXSKXPPXPKIGXXXXXXXXXXXPXGVFXXXKXGXGXXXGXFSK 275
           P G   KV R     S      ++                F     G G   G FS+
Sbjct: 364 PSGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSE 420


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 29/117 (24%), Positives = 35/117 (29%)
 Frame = -2

Query: 625 KXXPLXXKKXGXXXXTRGXXXPKXVKXPXXTXKTKXXXQFXEGXPXGLKGGXKNXXPPXG 446
           K  P   K        RG   PK V     + KT+   QF +  P G K G     P   
Sbjct: 385 KCDPRHGKYMACCLMYRGDVVPKDVNAAVHSIKTRRTVQFVDWCPTGFKCGINYQPPTAV 444

Query: 445 PXGXXXKVXRPXXXXSKXPPXPKIGXXXXXXXXXXXPXGVFXXXKXGXGXXXGXFSK 275
           P G   KV R     S      ++                F     G G   G FS+
Sbjct: 445 PGGDLAKVRRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSE 501


>11_01_0553 -
           4368233-4368320,4368427-4368514,4368595-4368668,
           4369000-4369160,4369233-4369322,4369406-4369480,
           4369569-4369640,4369719-4369891,4369964-4370078,
           4370274-4370387,4370582-4370661,4370755-4370842,
           4370941-4370997,4371111-4371176,4371254-4371349,
           4371459-4371566,4371941-4372039,4372108-4372227,
           4372399-4372437,4372940-4373026,4373276-4373347,
           4373443-4373509,4374455-4374546,4374631-4374708,
           4374785-4374922,4375029-4375164,4375306-4375468,
           4375690-4375849,4375950-4376056,4376149-4376259,
           4377850-4378159
          Length = 1107

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 487 GLKGGXKNXXPPXGPXGXXXKVXRPXXXXSKXPP 386
           G +GG +   PP GP G   K   P       PP
Sbjct: 4   GGRGGKRRGAPPPGPSGAAAKRAHPGGTPQPPPP 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,697
Number of Sequences: 37544
Number of extensions: 97650
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)