Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F17
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    40   4e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    36   0.007
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    29   0.99 
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    28   1.7  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = -2

Query: 222 KAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKS 112
           KAALI Q++ L+D+QI +LPP+Q+  IL +++ +  S
Sbjct: 380 KAALIAQLMALTDDQINVLPPDQKERILQIRQALPSS 416


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = -2

Query: 234 SDQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQ 124
           ++ ++ ALI Q+L L+ EQI  LPP QR  IL ++ Q
Sbjct: 323 NEGKRMALIQQLLALTPEQINALPPAQRDQILSIRRQ 359


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 155 NAPVYSC*KNKSRRAHSSVRNKNRANRFLCNSCNL 51
           N P Y    + S    +  +NK R +RFL N C++
Sbjct: 347 NTPKYGIIYHSSFIGKAGAKNKGRISRFLANKCSI 381


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 394 PERSAVGQCSTVQPGSEGAFKRSTKPA 314
           P  S  GQ ST QP S G F +ST+P+
Sbjct: 169 PNTSTFGQFST-QPASAGLFGQSTQPS 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,587
Number of Sequences: 5004
Number of extensions: 51187
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)