Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F16
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    72   8e-14
SPBC119.18 |||mitochondrial distribution and morphology protein ...    27   2.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   4.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   4.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   7.0  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    26   7.0  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   7.0  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    26   7.0  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 33/91 (36%), Positives = 52/91 (57%)
 Frame = -1

Query: 758 IGSHXFRHFCKMDVRNGLLEFIRRIMXXXXXXXXXXXXDKPTSMYYLLIEGNAFLWHQIR 579
           +G H FR+FCK+D    +  + RRI+               T +Y   ++G AFLWHQ+R
Sbjct: 234 LGEHDFRNFCKIDASKQITNYHRRILSSKVICIDPS-----TGLYAFDLQGTAFLWHQVR 288

Query: 578 CIMGVLLLIGEEKERPDVVLELLDVEKXSGK 486
           C+M +L LIG++ E   ++ +LLD++K   K
Sbjct: 289 CMMAILFLIGQKLEPASLINDLLDIKKVPTK 319


>SPBC119.18 |||mitochondrial distribution and morphology protein
           Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 69

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 271 DRANDECEQDEIASYAACLLQGVKPKNYTPLMK 173
           D  N +C++   A Y +CLL+ +K K   PL++
Sbjct: 32  DLHNRDCDE-LFAEYKSCLLKALKTKKIDPLLE 63


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 157  LNMWVFSSMECNFSVSPLAASTPRTMRFHLARTRHWPCL 273
            L  W+ +S +C F+ SP     P T+        H+P L
Sbjct: 1538 LGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITHFPSL 1576


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -2

Query: 307 ELEK-VPLASETEDRANDECEQDEIASYAACLLQG---VKPKNYTPLMKRPTCSTLHEKI 140
           ELEK +   SE E++ N       I       L+    V+ KN  P + RP+  T+    
Sbjct: 152 ELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSS 211

Query: 139 AHYKKRRK 116
           A  KK++K
Sbjct: 212 ALSKKKKK 219


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 427 IEDTNRWVYEREALITLISDLRTEWTMHAVKTTMIQ-DYIRELEKVPLASETEDRANDEC 251
           I + ++ + ERE L++L+SDL+T      +     +  +  E E + L+ +    +N++ 
Sbjct: 772 ISENDKLLAERERLMSLVSDLQTFLNQQQLSDAARKVKFESEKESLSLSLQKLKESNEKM 831

Query: 250 EQD 242
             D
Sbjct: 832 SND 834


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 629 MYYLLIEGNAFLWHQIRCIMGVLLL 555
           +Y L +EG++ + H IRC++G L L
Sbjct: 359 VYGLALEGSSGVSHVIRCLLGDLEL 383


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 620 LLIEGNAFLWHQIRCIMGVLL 558
           L+  G +F+ HQIR ++G+L+
Sbjct: 271 LIFHGQSFMKHQIRKMVGILI 291


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 398 FVHPSIGIFYLVRTFEQI---QREVRRHAVLRFSPXSS 502
           FV    GI +++   E +   QRE  R  V RFSP S+
Sbjct: 146 FVGSIFGIIFMMMALELVRRGQREFDRWCVRRFSPASN 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,820
Number of Sequences: 5004
Number of extensions: 51318
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)