Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F16
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404...    67   2e-11
04_04_0933 + 29495656-29496972,29497244-29497819,29499414-294996...    30   1.8  
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294...    29   5.5  
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400...    28   7.3  

>03_03_0156 +
           14939355-14939435,14939559-14939624,14940331-14940414,
           14940796-14940875,14941313-14941358,14941456-14941566,
           14942224-14942290,14942615-14942630,14942871-14942931,
           14943015-14943145,14943243-14943360,14944053-14944176,
           14944517-14944618,14944717-14944785,14946250-14946329
          Length = 411

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 35/91 (38%), Positives = 50/91 (54%)
 Frame = -1

Query: 758 IGSHXFRHFCKMDVRNGLLEFIRRIMXXXXXXXXXXXXDKPTSMYYLLIEGNAFLWHQIR 579
           IG H +R+FCKMD  N +  + R I                  ++ + I+G+AFLWHQ+R
Sbjct: 214 IGEHDYRNFCKMDAAN-VSNYRRHITDFNISAYDQRSNYD--ELWAITIKGSAFLWHQVR 270

Query: 578 CIMGVLLLIGEEKERPDVVLELLDVEKXSGK 486
           C++ VL LIG+  E P +V  LLD+ K   K
Sbjct: 271 CMVAVLFLIGQGLETPCIVDSLLDITKTPRK 301



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
 Frame = -2

Query: 487 KPQYSMASDLPLNLFKCAYEIEDTNRWVYEREALITLISDLRTEWTMHAVKTTMIQDYIR 308
           KPQY MAS++PL L  C +   D   ++   EA   LI  L+ E+  + ++  +  + + 
Sbjct: 301 KPQYKMASEIPLILRSCLF---DEVNFMCSSEASQALIEHLKDEYHQYMLQAAIFCEALS 357

Query: 307 EL---EKVPLASETEDRANDE--CEQDEIASYAACLLQGVK 200
            L   E  P     + R +      Q E+AS    +++G K
Sbjct: 358 CLCSPEPDPFEPRHKKRNHIPLMSRQTELASKQCSIVKGQK 398


>04_04_0933 +
           29495656-29496972,29497244-29497819,29499414-29499650,
           29499736-29500048,29500191-29500300
          Length = 850

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -2

Query: 304 LEKVPLASETEDRANDECEQDEIASYAACLLQ---GVKPKNYTPLMKRPTCSTLHEKIAH 134
           L++ P   + E    +E E DE  + A  +     G +PK+YT  ++      + +K+A+
Sbjct: 374 LDETPSQYDREIEEEEEAEVDEKTADAESVFHECDGTEPKSYTHSLQTEENELMPDKLAN 433

Query: 133 YKKRRKIIT 107
               RK+++
Sbjct: 434 EASERKLLS 442


>04_04_1374 -
           33028790-33028951,33029033-33029087,33029402-33029466,
           33029558-33029701,33029825-33029878,33029971-33030220,
           33030340-33030446,33031206-33031216,33032682-33032796,
           33032897-33033005,33033088-33033203,33033288-33033647
          Length = 515

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 320 LNHRCLDGVHSPFRSQIRYESDQC 391
           LNH   D  HS F+S+ +Y  D+C
Sbjct: 311 LNHSKSDVKHSKFKSKCKYSGDKC 334


>03_02_0812 -
           11439258-11439409,11439537-11439612,11439860-11440076,
           11440150-11440350,11440673-11440872,11440955-11441075,
           11441596-11441636,11441714-11441822,11442037-11442281,
           11442382-11442496,11442970-11443064,11444279-11444535,
           11444780-11444999,11445473-11445556
          Length = 710

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 196 SVSPLAASTPRTMRFHLARTRHWPCLPSRSPEGPFLARVCNL 321
           +VS   A  P + R   A +R  PC     P   F  RVC L
Sbjct: 5   AVSASPAPAPASFRPAAAASRFGPCAQVAGPAANFRTRVCGL 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,528,649
Number of Sequences: 37544
Number of extensions: 318646
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)