Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F14
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    29   0.58 
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   2.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   5.4  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   9.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.5  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 101  PHIKNKFKGDCERFVSFFYEISSPXFGVNFKI 196
            P ++ KF+G  E  V+FFY ++    G+  K+
Sbjct: 1212 PELRKKFEGQPEHVVNFFYYVAEELRGIMAKL 1243


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 413 ETFSLADSSSGAKRIFNTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSL 568
           E+ S + SSS  KR+F  H    ES   +S+ +   A  +     +YSNVS+
Sbjct: 221 ESVSFSSSSSVIKRMFKEH----ESVLRNSMDDFHTAISSSEIELNYSNVSV 268


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 410 PETFSLADSSSGAKRIFNTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLLDI 580
           P   ++A+ SS  +R  +T   D   E P SLS+T ++       YH  N S+  DI
Sbjct: 588 PIANAMAELSSSMRRRQSTSVDD---EAPVSLSKTSSSTRLNGLGYHSRNTSIASDI 641


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 160  FVKKTNKTFTIALKLIFDMGIINSSKTSI 74
            F+ +T+KT  +ALK  FDM   N+S + +
Sbjct: 1070 FMSETSKTLNMALKSEFDMTDFNNSGSKL 1098


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 161 ISSPXFGVNFKITKLNNKTKGTIVICA*QLLDIIESDMCLI 283
           I++P +G N   T L    +G  + CA   LDI+ S   ++
Sbjct: 218 INTPNWGTNTFSTPLKGDYQGQNLACAVTALDILSSSFSIM 258


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 449 KRIF-NTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLLDIV*TQSLPVFFFSSLW 625
           KR++ NT+ ++    R   +   L+A +   C YH +N  +      T  L  F F S W
Sbjct: 39  KRVYSNTNEVNGLQGRTFGIWTLLSAIVRFYCAYHITNPDVYFLCQCTYYLACFHFLSEW 98


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 479 SESERPDSLSETLNAFLTENCNYHYSNVSLLLDIV*TQSLPVFFFSS 619
           SES  P+S SET+   + +N N      S L+D     S+P  FF S
Sbjct: 134 SESSYPNSNSETITYDIDDNVN----PSSSLVDNFSISSVPSVFFQS 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,189
Number of Sequences: 5004
Number of extensions: 57705
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)