Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F07
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426     28   9.6  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    28   9.6  

>11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426
          Length = 860

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 477 FIXTHIFLEKFRL--HIRSDKKNTSHRLIHPNFNSSIIFNKL 358
           ++ TH  +E F +  H +    +  H+L+HP++  ++  N L
Sbjct: 517 WLNTHAVMEPFAIATHRQLSVAHPIHKLLHPHYRDNLFINAL 558


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 263 IKCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPSSXR 156
           ++CV++D        +   SPPRC PS+ +CP   R
Sbjct: 106 LQCVAKDAAAQPEMSWPRGSPPRC-PSS-SCPEPQR 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,330
Number of Sequences: 37544
Number of extensions: 352583
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)