Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_F06
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 347 1e-96
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 343 1e-95
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 144 1e-35
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 78 1e-15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.080
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.18
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.32
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.98
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.9
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.9
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 6.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.2
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 9.2
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 347 bits (852), Expect = 1e-96
Identities = 152/189 (80%), Positives = 171/189 (90%)
Frame = -2
Query: 703 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 524
DL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G
Sbjct: 255 DLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTG 314
Query: 523 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 344
+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AK
Sbjct: 315 RYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAK 374
Query: 343 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 164
V RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 375 VNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 434
Query: 163 DYEEVGMDS 137
DYEEVG DS
Sbjct: 435 DYEEVGQDS 443
Score = 32.7 bits (71), Expect = 0.060
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3
Query: 756 QIVSSITASLRFDGALNV 703
Q+VSSITASLRF G+LNV
Sbjct: 237 QVVSSITASLRFAGSLNV 254
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 343 bits (844), Expect = 1e-95
Identities = 152/189 (80%), Positives = 169/189 (89%)
Frame = -2
Query: 703 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 524
DL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G
Sbjct: 251 DLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAG 310
Query: 523 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 344
+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AK
Sbjct: 311 RYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAK 370
Query: 343 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 164
V RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 371 VDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430
Query: 163 DYEEVGMDS 137
DYEEVG DS
Sbjct: 431 DYEEVGQDS 439
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = -3
Query: 756 QIVSSITASLRFDGALNV 703
Q+VSSITASLRF+G+LNV
Sbjct: 233 QVVSSITASLRFEGSLNV 250
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 144 bits (349), Expect = 1e-35
Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 3/191 (1%)
Frame = -2
Query: 703 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 524
DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG
Sbjct: 249 DLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHG 308
Query: 523 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 344
+Y+ L+RG V K+V+ I +++TK + FV+W P + PP DL
Sbjct: 309 RYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL-- 361
Query: 343 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 173
+ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL +
Sbjct: 362 -KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 172 LEKDYEEVGMD 140
+ Y+E G+D
Sbjct: 421 EYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 78.2 bits (184), Expect = 1e-15
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 7/190 (3%)
Frame = -2
Query: 703 DLTEFQTNLVPYPRIHFPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP 533
DL +L+P PR HF L +Y P + E + +V ++ P NQMV +P
Sbjct: 252 DLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311
Query: 532 -RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 356
+ +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P +
Sbjct: 312 SKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNH 371
Query: 355 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEARE 185
++ + ML+N T+IA + R ++D + + AF+ Y E + E EF +R+
Sbjct: 372 RVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRD 426
Query: 184 DLAALEKDYE 155
+A L +YE
Sbjct: 427 VVADLINEYE 436
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.080
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = -3
Query: 702 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPV 529
TS S L+ + +++ T S+ P PT+ S +P + T+ ++ + +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 528 MASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 373
++ CT TS P T + S P +N +T S TS P
Sbjct: 441 TSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 30.3 bits (65), Expect = 0.32
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = -3
Query: 693 SSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTW 514
S+ + + TPV++S++ T SS P T P + T+ ++ + +TPV ++
Sbjct: 499 STSVPYTSTPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPL 550
Query: 513 LAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 379
CT TS P T P S ++ S++ PV+ + TTS
Sbjct: 551 ATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 28.3 bits (60), Expect = 1.3
Identities = 27/107 (25%), Positives = 48/107 (44%)
Frame = -3
Query: 699 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 520
+P+ T TP++T++ T +S+P T + +P + T+ ++ + +TPV ++
Sbjct: 410 TPTVPPTSSSTPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTST 466
Query: 519 TWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 379
CT TS P T + S P +N +T S TS
Sbjct: 467 PLTTTNCTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
Score = 27.9 bits (59), Expect = 1.7
Identities = 48/183 (26%), Positives = 67/183 (36%), Gaps = 11/183 (6%)
Frame = -3
Query: 741 ITASLRFDGALNVTSPSSRL-TWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQ--TH 571
+ ASL + +TS S T TP+ T S T +S + + PS + T
Sbjct: 60 LNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSS-SPLPSTSTSCTTS 118
Query: 570 ASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLP---SKP----SVLSNSSTGV 412
S PPT ++ + + T TS P T S S P S +ST +
Sbjct: 119 TSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSI 178
Query: 411 QPVSRSVS-TTSHPPWCPEATWPRFNVXXXXXXXXXXXPKLGLALTTSSTSCTPSVLSCT 235
P S S +T P P + ++ L T+STSCT S T
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS-PLPTTSTSCTTSTSIPT 237
Query: 234 GTS 226
G S
Sbjct: 238 GGS 240
Score = 25.8 bits (54), Expect = 6.9
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = -3
Query: 669 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 490
TP++T++ T +S+P T + +P + T+ ++ + +TPV +S + T V
Sbjct: 466 TPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPV 522
Query: 489 TSYPRM*TRPSLPSKPSVLSNSSTGVQ-PVSRSVSTTS 379
TS P T + + SVL S+ P++ + TTS
Sbjct: 523 TSTPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.18
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = -3
Query: 627 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 448
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 447 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 361
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 9.2
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = -3
Query: 627 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 448
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 447 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 358
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.32
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = -3
Query: 747 SSITASLRFDGALNVTSPSSRLTWCLTPVS-TSHWSRTRQSSLPRRPTMNSFPSPRSQTH 571
SS +S F + + SS + ++ S TS + T SS RP +S S +H
Sbjct: 347 SSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406
Query: 570 ASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSST 418
SS ++ ++ PV ++ + + +S+ + SL SKP + ++SS+
Sbjct: 407 KSSSSSKS-SSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSS 456
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.7 bits (61), Expect = 0.98
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 455 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 634
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 635 RVRDQWEVDTGVR 673
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 583 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 458
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -3
Query: 705 VTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 550
V P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1229 VPVPTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 291 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 118
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 117 EPKSTK 100
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 633 QSSLPRRPTMNSFPSPRSQTHASSPPTR 550
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 459 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 373
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 699 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 559
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 478 WVRRHHGTAYSKPCTCHDGG 537
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -3
Query: 672 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 520
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 462 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 367
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 9.2
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = -3
Query: 666 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 487
P+ SH S + S+ R + + H S PT+ +AT + S AV T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312
Query: 486 SYPRM*TRPSLPSKPSVLSNSSTG 415
+ P + P S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,304
Number of Sequences: 5004
Number of extensions: 67118
Number of successful extensions: 272
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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