Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_F05
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.062
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.19 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 30/126 (23%), Positives = 33/126 (26%), Gaps = 5/126 (3%)
 Frame = -1

Query: 610 PPPPPXXXXXXXPPPXXXXXXXXP-PPXKKXXXXXXXXXXKKXGGXPPPPXXXXXXXPXX 434
           P PPP       PPP        P  P +                 P PP          
Sbjct: 251 PAPPPI------PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAAL 304

Query: 433 GXXKKNPPPPXX----XGGXPXXXHXXXGGXXXXXPXPPPXXGXGXPPXGXXFXNXSPPP 266
              KK PPPP        G P   +          P PP     G  P      +  PPP
Sbjct: 305 AANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364

Query: 265 GXXXAP 248
               AP
Sbjct: 365 PPRSAP 370



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 37/173 (21%), Positives = 41/173 (23%), Gaps = 2/173 (1%)
 Frame = -2

Query: 609 PPPPPXXXXXXPPPPXXXXXXXXPPPKKXKXXXXXXXXKKXXGXXPPXP-PGXXXXPXXG 433
           PP PP      PP          PPP                   PP P       P   
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPP----IPPPSNGTVSSPPNSPPRPIAPVSMNPAIN 285

Query: 432 GXXKKTPPPPXGGXXXXXXXTXKXGGXXXXXPXPPLXXGXGXPP-XXXXXXTFLPPPGXX 256
              K   PPP            K        P PP     G PP       + LPPP   
Sbjct: 286 STSKPPLPPPSSRVSAAALAANK---KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPP--- 339

Query: 255 XPPLKXXRXXXEGXXSX*NXEGXGPPSKXNXXXXANEPPXIXLXRXGGNSSTP 97
            PP                     PP   +      +PP +   R   N   P
Sbjct: 340 -PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 386 PXXXPXXKXGGXKXPPPPPPXXGXGGAPP 300
           P   P    GG   PPPPP   G G  PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = -1

Query: 475 PPPPXXXXXXXPXXGXXKKNPPPPXXXGGXPXXXHXXXGGXXXXXPXPPP 326
           PPPP       P        PP P   G  P        G     P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 0.76
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 609 PPPPPXXXXXXPPPPXXXXXXXXPPP 532
           PPP P      PPPP        PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 29.1 bits (62), Expect = 0.76
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 386 PXXXPXXKXGGXKXPPPPPPXXGXGGA 306
           P   P     G   PPPPPP    GG+
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGS 790



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 609 PPPPPXXXXXXPPPP 565
           PPPPP      PPPP
Sbjct: 764 PPPPPGVAGAGPPPP 778



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = -1

Query: 472 PPPXXXXXXXPXXGXXKKNPPPPXXXGGXPXXXHXXXGGXXXXXPXPPP 326
           PPP       P         PPP    G P       G      P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/75 (28%), Positives = 21/75 (28%)
 Frame = +3

Query: 384 GXPPXXXGGGGFFFXXPXXGXXXXXXXGGGGXPPXFFXXXXXXXXFXFFXGGGXXXXXXX 563
           G PP   GG G F      G       G GG P  F              GGG       
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257

Query: 564 XGGGXXXXXXXGGGG 608
            GG        GG G
Sbjct: 258 PGGFGGGPGGHGGPG 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,283
Number of Sequences: 5004
Number of extensions: 26627
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)