Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_E22
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   4.0  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.0  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   5.4  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   9.4  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.4  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 304 LSPNELF*YIMKPLNPQGTVYRSLAELRLNLALKSIMCYLA 182
           L+  +L  Y+MK L  +G  + + AE  +   +K  +CY+A
Sbjct: 180 LAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVA 220


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 422 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 330
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 370 PKISI*IILAIRRN*CTVRSRKLSPNELF*YIMKPLNPQG 251
           P++SI ++     +   ++SR+LSPNE   ++M+   P G
Sbjct: 46  PELSIRVVAPPNAS-SELQSRELSPNESILFVMETYYPHG 84


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 224 KVKPGFEKYYVLSSFQCSSGCMYPNYTV 141
           K+  GF+K+Y    F C  G + P + +
Sbjct: 76  KIVSGFKKFYHNKPFLCDHGGILPKFEI 103


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 396 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 488
           IKLI +  S++  +L    I  +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,255
Number of Sequences: 5004
Number of extensions: 57188
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)