Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_E15
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U12966-7|AAK84534.1|  352|Caenorhabditis elegans Dumpy : shorter...    30   2.3  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    28   7.0  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    28   7.0  
U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    28   7.0  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical pr...    28   9.2  
CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical ...    28   9.2  
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    28   9.2  
AC006631-4|AAY86200.1|   59|Caenorhabditis elegans Hypothetical ...    28   9.2  

>Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC373.7 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 589 PWXGGSPGQFPAGXPATEGFPGP--EPXXXTGFPXXCP 482
           P   G PG  PAG P T G PGP  +    T  P  CP
Sbjct: 105 PGPPGPPG--PAGQPGTPGAPGPKGQDSTTTFAPINCP 140


>U12966-7|AAK84534.1|  352|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 17 protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 516 GSGPGNPSVAGXPAGNXPGXPPXH 587
           GSGP  PS    P G  PG P  H
Sbjct: 76  GSGPSGPSGPSGPHGGFPGGPQGH 99


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -3

Query: 589 PWXGGSPGQFPAGXPAT---EGFPGPEPXXXTGFP 494
           P  GGSP  F AG P +   +G+PG      + +P
Sbjct: 178 PQAGGSPSSFQAGAPTSQNVQGYPGGPSSAPSAYP 212


>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 580 GGSPGQFPAGXPATEGFPGPEPXXXTG 500
           GG PG  P G P   G PG  P    G
Sbjct: 284 GGFPGGMPGGFPGAGGMPGGFPGAPGG 310


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 580 GGSPGQFPAGXPATEGFPGPEPXXXTG 500
           GG PG  P G P   G PG  P    G
Sbjct: 284 GGFPGGMPGGFPGAGGMPGGFPGAPGG 310


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 589 PWXGGSPGQFPAGXPATEGFPGP 521
           P   G+PG+   G P  +G+PGP
Sbjct: 813 PGAPGAPGETGFGFPGQDGYPGP 835


>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +3

Query: 501 PVXXXGSGPGNPSVAGXPAGNXPGXPPXHGXRXXXXP 611
           P    G  PG+  + G P     G PP HG      P
Sbjct: 167 PPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPP 203


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +3

Query: 501 PVXXXGSGPGNPSVAGXPAGNXPGXPPXHGXRXXXXP 611
           P    G  PG+  + G P     G PP HG      P
Sbjct: 447 PPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPP 483


>Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.2 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 591 PRGXGXPPXNSRPGSRXXKGSPG 523
           PRG   PP   RPG R   GSPG
Sbjct: 104 PRGPPGPP--GRPGQRGTSGSPG 124


>Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical
           protein M18.1 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 589 PWXGGSPGQFPAGXPATEGFPGPE 518
           P   G+PG    G P T G PGP+
Sbjct: 197 PGAPGAPGTRSVGRPGTAGSPGPQ 220


>CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical
           protein C52D10.13 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 616 PXGKXXXRXP-WXGGSPGQ-FPAGXPATEGFPGPE-PXXXTGFP 494
           P G    + P    G+PG+  PAG P  +G PGP  P    G P
Sbjct: 144 PPGPPGPKGPDGESGAPGEPGPAGRPGNKGAPGPAGPVGADGEP 187


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 516 GSGPGNPSVAGXPAGNXPGXPPXHGXR 596
           G  PG P   G  AG  P  PP  G R
Sbjct: 216 GPAPGAPRAGGSGAGGAPRPPPPAGPR 242


>AC006631-4|AAY86200.1|   59|Caenorhabditis elegans Hypothetical
           protein F27B3.8 protein.
          Length = 59

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 589 PWXGGSPGQFPAGXPATEGFP 527
           PW  G+PGQ P G   +E FP
Sbjct: 22  PWQDGAPGQ-PGGDEQSEAFP 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,854,218
Number of Sequences: 27780
Number of extensions: 115754
Number of successful extensions: 1062
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)