Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_E11
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    69   6e-13
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    30   0.32 
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    28   1.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   4.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.3  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    26   7.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   9.2  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 69.3 bits (162), Expect = 6e-13
 Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 11/196 (5%)
 Frame = -1

Query: 671 PQQQEQVRLVRLCLY--REGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVR 498
           P + +  + +R  LY  R GF+VD GP+  Y DP N E L  I  G  P  L G  ++  
Sbjct: 203 PTESQPEKPLRRTLYFWRNGFSVDDGPIYTYDDPANQEMLRYINSGRAPLHLLGVSMNQP 262

Query: 497 VSLEDSRHEECPRHVVKPQAFAGKGHMLGSP-TPP--------XXXXXXXXXXXXXXXXA 345
           + +   +H     +V   + F+GKG  LGS    P                         
Sbjct: 263 IDVV-VQHRMDEDYVAPFKPFSGKGQRLGSTYMQPRMSQMPGGLYTDTSTSSSVPINVKP 321

Query: 344 NLRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFS 165
           N     +++ +DE +P T +Q RL++G R     N SHT+  + E V    P      F 
Sbjct: 322 NSTTPHASLQIDENKPTTRIQVRLSNGGRTVLTVNLSHTLHDIYEAVRAVSPG----NFI 377

Query: 164 LLTAFPSAELGDDAAI 117
           L   FP+  L DD ++
Sbjct: 378 LSVPFPAKTLEDDPSV 393


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -1

Query: 296 VTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAELGDDAAI 117
           VT +Q R+ +G R   RF+ +  V  +  +V         +PFSL     S     D+ I
Sbjct: 353 VTRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSLTFQRKSLWTSLDSTI 412

Query: 116 PGAG 105
             AG
Sbjct: 413 KEAG 416


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -1

Query: 584 SDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSP 405
           S PENA +L  +   EI S +     S++ S  D R  + P H +   A  G G M   P
Sbjct: 138 SCPENAIYLVVLPSYEIESSIDYYLSSLQESFSDFRVPKDPLHGLSGYAVFGLGDMENYP 197


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 676  MQTLARDHLQFVLIYSQL 729
            +QTLARDH+ F L+ +Q+
Sbjct: 2270 LQTLARDHVAFTLMLAQV 2287


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 95  EQVRLRQGSRRRHPAPRSGRP 157
           + +RL    R R P+PRSGRP
Sbjct: 337 QSLRLGSLHRSRSPSPRSGRP 357


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -1

Query: 608 DAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAG 429
           D+  L   SD  + +  S   R      +S   VSV VSL  +     P+   K +  A 
Sbjct: 278 DSSDLSSTSDSSSGDESSDTARQSSSDTISSNNVSVSVSLNTANEFSFPQGTFKAENEAV 337

Query: 428 KGHML-GSPTPP 396
           +  +   S TPP
Sbjct: 338 ESEVAPSSSTPP 349


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -1

Query: 596 LRHYSDPENAEF 561
           LRHYS+PE AEF
Sbjct: 638 LRHYSNPEIAEF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,337
Number of Sequences: 5004
Number of extensions: 35283
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)