Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_E11
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 102 3e-22
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 99 2e-21
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073... 31 0.78
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 31 1.0
05_03_0150 - 8953545-8954024 31 1.0
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 30 1.8
10_08_0317 - 16697139-16697156,16698319-16698650,16698913-16699033 30 2.4
06_03_0941 + 26179682-26182327 30 2.4
05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869 29 4.1
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 4.1
05_05_0175 + 22966151-22967614 28 9.6
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 28 9.6
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 28 9.6
02_03_0188 + 16173801-16173910,16174045-16174402 28 9.6
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 102 bits (245), Expect = 3e-22
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 1/184 (0%)
Frame = -1
Query: 677 IDPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVR 498
+ PQ E + + + + GFTV+ GPLR + DP NA FL I+ E PSEL +
Sbjct: 251 VAPQSPESI-VHNIYFWTNGFTVNDGPLRSFDDPANASFLKSIKNSECPSELEPADKKSQ 309
Query: 497 VSLEDSRHEE-CPRHVVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSA 321
V++ R EE CP V + F G LG+P+ +
Sbjct: 310 VNVNLVRKEEKCPEPVKRAAPFHGAAKTLGTPSDNNSTPPEATSAAAAASSTETASKTVT 369
Query: 320 VTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSA 141
+T+D++ P T+LQ R DG+R+ FN SHT+ +R F+ P + ++L FP
Sbjct: 370 ITVDDSLPSTSLQIRFVDGSRMVAHFNTSHTIADVRAFIDTTRPG-EAGDYTLQAGFPPK 428
Query: 140 ELGD 129
L D
Sbjct: 429 PLDD 432
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 99 bits (238), Expect = 2e-21
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
Frame = -1
Query: 629 YREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSEL--SGQGVSVRVSLEDSRHEECPRH 456
+ GFTVD GPLR Y DP NA+F+ I++ + P EL + + V V++ R E+
Sbjct: 163 WNNGFTVDDGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVI-KRLEDYQAP 221
Query: 455 VVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQPVTTLQFR 276
+ P F G G LG + + +D++ P T++Q R
Sbjct: 222 LRPPSPFQGVGRTLGGGSSAEESQAPAPATQEPRRSVG-------IVVDDSLPFTSIQLR 274
Query: 275 LADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAELGDDA 123
LADGTR+ RFN HTVG +R F+ + P RP+ L T FP +L D A
Sbjct: 275 LADGTRMVARFNMHHTVGDIRSFIDASRPG-ATRPYQLQTGFPPKQLADPA 324
>03_06_0557 +
34704990-34705400,34706271-34706485,34707142-34707367,
34707447-34707532,34708030-34708121,34708232-34708471,
34709455-34709750
Length = 521
Score = 31.5 bits (68), Expect = 0.78
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 74 PLHDRRVEQVRLR---QGSRRRHPAPRSGRPSAD*MAAAGTPAPLATRTPSA 220
P H RR +Q RLR S P+PRSGR A AAA PA +A A
Sbjct: 23 PPHSRRQQQQRLRSPTSPSLSPSPSPRSGRHKA---AAAAPPAVVAAAAVGA 71
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 80 HDRRVEQVRLRQGSRRRHPAPR-SGRPSAD*MAAAGTPAPLATRT 211
+D+R+E+ R R+ R R P+P S PS A+A TP T T
Sbjct: 511 YDKRMERERERERKRVRAPSPSPSPSPSPSPSASATTPTQTGTST 555
>05_03_0150 - 8953545-8954024
Length = 159
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 672 STTTRASETGETVSVPRRLHG-GRGSAAPLQRPGERGVP 559
ST T +E G+ ++V R + G G G A + PGE G P
Sbjct: 43 STVTVLAEHGDDIAVRRPVAGIGAGEEASVAAPGEHGAP 81
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = -1
Query: 692 RASVCIDPQQQEQVRLVRLCLYREGFTVDA------GPLRHYSDPENAEFLSCIRRGE 537
RAS +DP ++ +V L L R+GF +A PLRHY+ ++ SC GE
Sbjct: 1229 RASRELDPDERHFACMVNL-LSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGE 1285
>10_08_0317 - 16697139-16697156,16698319-16698650,16698913-16699033
Length = 156
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 566 PRSPGRCSGAADPRPP*SLR-GTDTVSPVSLALVVVDRCRHWLVI 697
P S GR PR P S R GTD S S++ +DR R W+++
Sbjct: 113 PSSDGRGGDKIKPRGPRSSRDGTDRASS-SISRTRIDRARGWVML 156
>06_03_0941 + 26179682-26182327
Length = 881
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 611 VDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLE 486
V AGP HY +P N + + I + E P +GV V S+E
Sbjct: 369 VTAGPSLHYPNPPNPDKVLYINKKEAPLLKVERGVPVTFSVE 410
>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
Length = 664
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/80 (30%), Positives = 30/80 (37%)
Frame = -1
Query: 635 CLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRH 456
C +E + A RH E EFLS R P L G ++S ED R
Sbjct: 368 CTIQESYAAAAAAARHPKPDEQVEFLSSSRAMTTPLLLQNGG---QLSSEDVR--RLAAA 422
Query: 455 VVKPQAFAGKGHMLGSPTPP 396
++ P A M PT P
Sbjct: 423 LLPPTPSAAVSPMQRKPTKP 442
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 125 RRHPAPRSGRPSAD*MAAAGTPA 193
RRHP+P +GR SA AAG+ A
Sbjct: 51 RRHPSPNAGRSSAAAAEAAGSQA 73
>05_05_0175 + 22966151-22967614
Length = 487
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 554 SSGTPRSPGRCSGAADPRPP 613
++GTPRS RC G P P
Sbjct: 85 AAGTPRSAARCGGGGSPGAP 104
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -3
Query: 678 HRSTTTRASETGETVSVPRRLHGGRGSAAPLQRPGERGVPELHTS 544
H +T TR V VPRR GG PL+ PG R V + S
Sbjct: 46 HPNTPTRP-RAPSLVRVPRR--GGEAVVPPLESPGFRSVQPVSVS 87
>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 653 VRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRR 543
+ L+ LCL E F D L +P+ ++C+RR
Sbjct: 921 IALLMLCLLTEAFYADGTSLGDVCEPKLGAEITCLRR 957
>02_03_0188 + 16173801-16173910,16174045-16174402
Length = 155
Score = 27.9 bits (59), Expect = 9.6
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +3
Query: 81 MTVELSRFACARDRGVVTQLRA----REG---RQQTEWPQLVRRLRSRHELPQRADRVAV 239
+TV ++ + A + GV T R R G R+ Q RR RHE + AV
Sbjct: 31 LTVAVASWQAAAEIGVGTAARGGTEDRHGWRLRRPARHRQWWRRGWLRHE--EAWPVAAV 88
Query: 240 VEPARDAGAVGQSELQRSDGLR 305
V P GA+G+ QRSD L+
Sbjct: 89 VVPQECRGAIGKGSDQRSDRLQ 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,277
Number of Sequences: 37544
Number of extensions: 328632
Number of successful extensions: 1426
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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