Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_E09
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640...    46   5e-05
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544...    46   5e-05
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586...    46   5e-05
09_04_0707 + 19645471-19646112                                         29   5.7  

>09_02_0577 -
           10862976-10863215,10863653-10863788,10863906-10864030,
           10864132-10864516,10864571-10864798,10864976-10865319
          Length = 485

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 41/135 (30%), Positives = 51/135 (37%), Gaps = 1/135 (0%)
 Frame = -2

Query: 731 LAGXXXYXSRPESXAXXXXDXGXPXXXXSXMXXSXAXLXKRXIDVSGSSAKDVTXTX-EG 555
           + G   Y + P S A    +          M  + A   K  I+VSGSSAKDV     E 
Sbjct: 349 VGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQ 408

Query: 554 TPDGDARXP*QLHDPMN*TXTXXXXXXXXXXXXXXXVSAADFLGAIXSGXGILXXVTIIY 375
                      L   +N                      ADF+GAI SG GIL  VTIIY
Sbjct: 409 QMVMPGHRESNLQKELN--RYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIY 466

Query: 374 QYCRDICQEQSEMXG 330
           QY     +E++   G
Sbjct: 467 QYFETFEKERATELG 481


>09_02_0576 -
           10853361-10853600,10854033-10854168,10854285-10854409,
           10854487-10854871,10854934-10855161,10855332-10855675
          Length = 485

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 41/135 (30%), Positives = 51/135 (37%), Gaps = 1/135 (0%)
 Frame = -2

Query: 731 LAGXXXYXSRPESXAXXXXDXGXPXXXXSXMXXSXAXLXKRXIDVSGSSAKDVTXTX-EG 555
           + G   Y + P S A    +          M  + A   K  I+VSGSSAKDV     E 
Sbjct: 349 VGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQ 408

Query: 554 TPDGDARXP*QLHDPMN*TXTXXXXXXXXXXXXXXXVSAADFLGAIXSGXGILXXVTIIY 375
                      L   +N                      ADF+GAI SG GIL  VTIIY
Sbjct: 409 QMVMPGHRESNLQKELN--RYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIY 466

Query: 374 QYCRDICQEQSEMXG 330
           QY     +E++   G
Sbjct: 467 QYFETFEKERATELG 481


>03_02_0140 +
           5864612-5864955,5865154-5865381,5865460-5865814,
           5865899-5866023,5866150-5866285,5866382-5866621
          Length = 475

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 41/135 (30%), Positives = 51/135 (37%), Gaps = 1/135 (0%)
 Frame = -2

Query: 731 LAGXXXYXSRPESXAXXXXDXGXPXXXXSXMXXSXAXLXKRXIDVSGSSAKDVTXTX-EG 555
           + G   Y + P S A    +          M  + A   K  I+VSGSSAKDV     E 
Sbjct: 339 VGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQ 398

Query: 554 TPDGDARXP*QLHDPMN*TXTXXXXXXXXXXXXXXXVSAADFLGAIXSGXGILXXVTIIY 375
                      L   +N                      ADF+GAI SG GIL  VTIIY
Sbjct: 399 QMVMPGHRESNLQKELN--RYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIY 456

Query: 374 QYCRDICQEQSEMXG 330
           QY     +E++   G
Sbjct: 457 QYFETFEKERATELG 471


>09_04_0707 + 19645471-19646112
          Length = 213

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 437 ADFLGAIXSGXGILXXVTIIY 375
           AD  GAI SG GIL   T++Y
Sbjct: 183 ADMTGAIGSGTGILLAATVVY 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,940,489
Number of Sequences: 37544
Number of extensions: 189536
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)