Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_E06
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.2  
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    27   2.2  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   6.9  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    25   9.1  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.1  

>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -2

Query: 722 DSQIRYENIELSSPKHRTELSYAEILALGLPRQIKTQSVVNMPKPQVAQI 573
           D Q+R      SS KHR  + YA+ L L     +K  S   M K  V +I
Sbjct: 257 DDQVRLAKCLPSSSKHRDRILYAKFLELN-ESLLKVASFQQMNKLAVTKI 305


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 229 SKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 116
           SKI  L  ++ + S+   T+  G  TDD   L VP+ S
Sbjct: 64  SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLS 101


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -3

Query: 265 ANKSEIIQKDFDSKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEESQ 113
           A + + IQ++F+ +I +L  +Q      +E LEA  +  +SET +  ++ +
Sbjct: 134 AKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKE 184


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 229 SKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 116
           SKI  L  ++ +  E   T+  G  TDD   L VP+ S
Sbjct: 64  SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLS 101


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 635 VLKPKFPHMIIQYDALENLVQY 700
           VLKP+F H ++++   + +VQY
Sbjct: 19  VLKPEFQHCLVKHGINQLIVQY 40


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 268 EANKSEIIQKDFDS-KIEELNPKQGS-DSEPVETLEAGLKTDDSETLEVPEESQL 110
           E  KS  IQ D  + K +E++ K  S  ++P    +    TDD++  E P+E+ +
Sbjct: 811 EVQKS--IQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKEAPKEASI 863


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,349
Number of Sequences: 5004
Number of extensions: 41063
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)