Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_E05
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   151   5e-37
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   151   5e-37
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314     32   0.44 
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.1  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.2  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  151 bits (367), Expect = 5e-37
 Identities = 69/121 (57%), Positives = 85/121 (70%)
 Frame = -1

Query: 768 PXXXXVXSSRPFGQXXVXXFXAHTGXTXIAGRFTPGXFTNQIQAAFXEPRLLIVLDPAQD 589
           P    V S+RP+GQ  V  F  +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134

Query: 588 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLX 409
           HQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG + 
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTIL 194

Query: 408 P 406
           P
Sbjct: 195 P 195


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  151 bits (367), Expect = 5e-37
 Identities = 69/121 (57%), Positives = 86/121 (71%)
 Frame = -1

Query: 768 PXXXXVXSSRPFGQXXVXXFXAHTGXTXIAGRFTPGXFTNQIQAAFXEPRLLIVLDPAQD 589
           P    V S+RP+GQ  V  F  +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134

Query: 588 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLX 409
           HQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG + 
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTIL 194

Query: 408 P 406
           P
Sbjct: 195 P 195


>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
          Length = 368

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 373 NKSTTTSQRWSRGKYTTKPQHFTCQQPPHQTNRVGRLGVAW 495
           N S+T+S  WS  K+T KP  FT   P    + + +   AW
Sbjct: 321 NSSSTSSSIWSTSKWTLKPDAFTLPLPLPLFDNIPKPIAAW 361


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 209 TRCSSCFWSTPCSRRMVCPGTR 144
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,521,685
Number of Sequences: 37544
Number of extensions: 360814
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)