Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_E01
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.59
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 7.3
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 9.6
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.5 bits (63), Expect = 0.59
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1594 PTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 522 AHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
A+ P++P + Y P S + P S S SP A P YSP
Sbjct: 1570 AYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSP 1615
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1622 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1636 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1643 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1650 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1685 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1699 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 522 AHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -1
Query: 537 LPVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
+P ++ PT+P + Y P S + P S S S P YSP
Sbjct: 1572 MPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSP 1622
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + S S SP P YSP
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSP 1629
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y S + P S S SP P YSP
Sbjct: 1587 PTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ T+P + Y P S + P S S SP P YSP
Sbjct: 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1650
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 552 IHWSRLPVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNP--ALGPFYS 388
+H R+ + A P+ L P S Y P A + S+ P F P + P+Y+
Sbjct: 234 LHGVRIQLSWARPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPFSPINPYYA 290
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 616 SRRIRXHXTXAXXQASILNQFNPLVTTAGLRSAXPDGAAQPT 491
S R+R H + + + N + T+G R A PD A P+
Sbjct: 791 SNRVRGHQSRPSTGSQLRNVVPVSIVTSGGRPALPDEMASPS 832
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 335 LSGVITWTERTFKLYL 288
LSG+ TW TF+ YL
Sbjct: 104 LSGIYTWIRNTFRYYL 119
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 510 TAPLSPLXASRYHPYSKAGLPASL 439
T P++P+ SR HP GL ++L
Sbjct: 9 TGPINPVFPSRAHPSPPLGLTSNL 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,299
Number of Sequences: 5004
Number of extensions: 48282
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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