Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_E01
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 35 0.088
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 32 0.62
07_03_0944 + 22787933-22789906 31 1.1
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 34.7 bits (76), Expect = 0.088
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -1
Query: 543 SRLPVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
S +P H PT+P+ + Y P S P SLS SP P Y+P
Sbjct: 1633 SYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNP 1685
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 534 PVFXAHXPTAP-LSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYS 388
P A+ PT+P SP S Y P S + P+S+ +P A++P+ +YS
Sbjct: 1782 PTSPAYSPTSPGYSPTSPS-YSPSSPSYNPSSVKYTPSHAYSPSSPNYYS 1830
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP + P YSP
Sbjct: 1740 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSP 1789
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S A P S + SP P YSP
Sbjct: 1754 PTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSP 1803
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P +S Y P S A P S SP P Y+P
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNP 1810
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSPYA 379
P + PT+P + Y P S + P+S SP A++P+ P SPY+
Sbjct: 1720 PTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPS-SPRLSPYS 1770
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P+ + Y P S A P S S SP P YSP
Sbjct: 1636 PTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1685
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P A+ PT+P + Y P S + P S S SP P YSP
Sbjct: 1650 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P A+ PT+P + Y P S + P S S SP P YSP
Sbjct: 1657 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1601 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSP 1650
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1608 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSP 1657
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1573 PASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1622
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1594 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P + PT+P + Y P S + P S S SP P YSP
Sbjct: 1643 PTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1720
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYG-AFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP A++P P YSP
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPGYSP 1727
>07_03_0944 + 22787933-22789906
Length = 657
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 519 HXPTAPLSPLXASRYHPYSKAGL-PASLSXSPYGAFNPALGPFYSPYAMYGQRLGAAAVH 343
H LSP+ +R YS L P+SL+ SP+G +P P + R+GA A
Sbjct: 492 HQQKGLLSPVNTNRM--YSPRALDPSSLAHSPFGGMSPRSPRTMEPTSPLSARVGAPATQ 549
Query: 342 Q 340
+
Sbjct: 550 R 550
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,252,373
Number of Sequences: 37544
Number of extensions: 321994
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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