Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_E01
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 1.7
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 1.7
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 29 3.9
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 29 3.9
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
PV ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P+S S SP P YSP
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSP 1684
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P + PT+P + Y P S P S S G ++P+ P YSP
Sbjct: 1677 PTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPS-SPKYSP 1725
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1614 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSP 1663
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 1670
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P+S S SP P YSP
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSP 1677
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
PV ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1663
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P+S S SP P YSP
Sbjct: 1642 PTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSP 1691
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P + PT+P + Y P S P S S G ++P+ P YSP
Sbjct: 1684 PTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPS-SPKYSP 1732
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSP 1670
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P S S SP P YSP
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 1677
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 534 PVFXAHXPTAPLSPLXASRYHPYSKAGLPASLSXSPYGAFNPALGPFYSP 385
P ++ PT+P + Y P S + P+S S SP P YSP
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSP 1684
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 474 HPYSKAGLPASLSXSPYGAFNPALGPFYSPYAMYGQRLGAAAVHQ 340
+PY+ A SL P GA +P P + P +YG + AAA Q
Sbjct: 99 NPYAAALRSPSLMF-PMGAMSPTF-PMFPPSPVYGAAIAAAAAKQ 141
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 474 HPYSKAGLPASLSXSPYGAFNPALGPFYSPYAMYGQRLGAAAVHQ 340
+PY+ A SL P GA +P P + P +YG + AAA Q
Sbjct: 98 NPYAAALRSPSLMF-PMGAMSPTF-PMFPPSPVYGAAIAAAAAKQ 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,466,953
Number of Sequences: 27780
Number of extensions: 282437
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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