Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D23
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U23450-7|AAK31470.3|  170|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.5 protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 450 CDNDASLRRFTRSKREVSFSSAESCFIFNKGAAGRS 557
           C+   +L +  RSK+  SFSS  S  +FN  A+G S
Sbjct: 194 CNYVGNLYQMYRSKKPYSFSSEGSIVVFNLAASGNS 229


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -3

Query: 342 TRPGR-ISTRISLLYPPCPGR*QFKTSRQPSNLSPTIRRTISR 217
           T+P + I +R+SLL PP P   Q K +++   ++ T RRTI++
Sbjct: 320 TKPKKEIKSRVSLLPPPAPKAPQ-KENKEGGEMTETPRRTITK 361


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -3

Query: 342 TRPGR-ISTRISLLYPPCPGR*QFKTSRQPSNLSPTIRRTISR 217
           T+P + I +R+SLL PP P   Q K +++   ++ T RRTI++
Sbjct: 388 TKPKKEIKSRVSLLPPPAPKAPQ-KENKEGGEMTETPRRTITK 429


>U23450-7|AAK31470.3|  170|Caenorhabditis elegans Hypothetical
           protein C30B5.6 protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 313 LTAVPSVPGTITIQNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVVVSYVPI 161
           LT +PS   + T +  +    +V+   K      D+ VP K+ + VS  PI
Sbjct: 89  LTTLPSTTQSTTTRTTTQPSTIVSTRQKYVNVDGDIYVPGKTVISVSSTPI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,807
Number of Sequences: 27780
Number of extensions: 298775
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)