Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D23
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.7  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 208 VLVPAKSTVVVSYVPIKHEKREKD 137
           +L+   ST VVS    KH +R +D
Sbjct: 13  LLLSIASTYVVSVAGYKHSRRHRD 36


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 519 FQLTKTTPLF*IW 481
           F L K +PLF IW
Sbjct: 303 FNLVKISPLFTIW 315


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 696 RPPSAAPVPVTEDADALASRINKL 625
           RPPS   +PV  D +   + IN +
Sbjct: 2   RPPSKQGLPVLVDFNIFVADINSI 25


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 519 FQLTKTTPLF*IW 481
           F L K +PLF IW
Sbjct: 53  FNLVKISPLFTIW 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,793
Number of Sequences: 438
Number of extensions: 3821
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)