Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D19
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical
           protein C08A9.9 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 605 PRLXSGGWIGPVSSMEVKTAWMASPGDLTVH*TSSAYIDLPXYTPYRPFASXGXSXXDIL 784
           P +     + P +S   +T+  AS G  T + T S + + P Y   R FAS   S  D L
Sbjct: 198 PAVRQSAIVTPSASENNRTSNAASNGKQTHYLTQSNFDNAPSYATTRKFASNITSQIDRL 257

Query: 785 ES 790
            S
Sbjct: 258 FS 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,503,187
Number of Sequences: 27780
Number of extensions: 405534
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)