Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D15
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    27   4.1  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   5.5  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   9.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.5  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    25   9.5  

>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 569 LQYLHV*RAERPHRNVSQNVPEQRPGPYA 655
           ++Y HV         VS+N+PE+ P PY+
Sbjct: 87  VRYTHVMAHPNTTTTVSENLPEEVPPPYS 115


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 518 DKERDLNEERTRRN-RAALAHKRSFFVRMVSDPK 420
           D     N  R R++  +  A KR FF R++S+PK
Sbjct: 879 DNPTSSNSSRKRKDFNSGKAIKRDFFGRIISEPK 912


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 348 CTFHARYSIRLWLHST 301
           C FH+ Y I+L +H+T
Sbjct: 166 CNFHSMYQIKLSIHAT 181


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 363 VTTRCCTFHARYSIRLWLHSTAHYAEAIVLDKLASW 256
           V  + C + + Y  R W H+  +++   V+   A W
Sbjct: 314 VEWKSCFYKSYYEYRSWFHNVTNFSRIWVMHISAYW 349


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 306 NGARVGWSIWRGRCSSGW*PRR 371
           NG R+   + RGR   GW PR+
Sbjct: 167 NGRRIVVDVERGRTVKGWLPRK 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,260
Number of Sequences: 5004
Number of extensions: 64267
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)