Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D14
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    30   0.43 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.75 
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    28   1.3  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi...    27   3.0  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   5.3  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   5.3  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    26   5.3  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   7.0  
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   7.0  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   9.2  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   9.2  

>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -2

Query: 574 KQNLQEQ-VKQTEEQRIKALQDLNRQKEEMKKLSEGEK 464
           KQ  QE+ ++Q E +R+K  ++  +Q+E+ KKL E EK
Sbjct: 82  KQRAQEERIRQKEAERLKREKE-RQQREQEKKLREQEK 118


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 562 QEQVKQTEEQRIKALQDLNRQKEEMKKLSEGEKAK 458
           +E  K+ EEQR+K  Q+  +Q+ E +K  E +K K
Sbjct: 635 EEARKKREEQRLKREQEKKQQELERQKREEKQKQK 669


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -2

Query: 580 NIKQNLQEQVKQTEEQRIKALQDLNRQKEEMKKLSEGE 467
           N K+  QE++ + +E+ +K+  +  RQK E ++ ++G+
Sbjct: 58  NWKKQEQEEINRKKEEELKSKFEKLRQKNERRRRTQGK 95


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 571 QNLQEQVKQTEEQRIKALQDLNRQKE-EMKKLSE 473
           ++   Q K   E+++K L DLN QK+ ++K+L E
Sbjct: 139 RSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKE 172


>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 577 IKQNLQEQVKQTEEQRIKALQDLNRQKEEMKKLSEGEKAKM 455
           + +++QEQ+   E++R +A QD    +EE+   S  E+ +M
Sbjct: 53  LNRSMQEQLDLEEQEREEANQDTELDEEELGSGSFPEEGEM 93


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 538 EQRIKALQDLNRQKEEMKKLSEGEK 464
           EQ IK  +  N+QKEE K +S+G K
Sbjct: 253 EQTIKPSKQ-NKQKEEKKTISQGNK 276


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 322 PPLKQPIQSLLFVLESVDRLEISQL 396
           PPL  P Q LL+V E+   LEI  L
Sbjct: 245 PPLFSPYQHLLYVAEASGLLEIYDL 269


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 583 GNIKQNLQEQVKQTEEQRIKALQDLNRQKEEMKKLSEGEKA 461
           GN      E+ K+ EE+R+K L     +KEE +   E +++
Sbjct: 63  GNWTPEALEEAKKKEEKRLKRLDAKYGRKEEGESQEESKRS 103


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 586 IGNIK--QNLQEQVKQTEEQRIKALQDLNRQKEEMKKLSEGE 467
           I N+K  +NL      ++ +R++ LQ++  Q EE   L +GE
Sbjct: 698 ITNLKGMENLPNLAYASKAERLELLQEVLLQNEEAADLDDGE 739


>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -3

Query: 375 IYRFEYKQERLN---WLL*RRKEYNNK 304
           I RFE+ +E      WLL  RK+YN K
Sbjct: 34  ILRFEWSEEMYRLYIWLLPYRKDYNEK 60


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 329 SGGKNTTTSRSLE*SHKKLAK-STGNGN 249
           S G+  TTS SL  SH+K A+  TG G+
Sbjct: 93  SRGQEATTSPSLSASHEKPARPQTGEGS 120


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 275 LAKSTGNGNIYRLVCTFYTSNPQTQPTEFLAGSSQW 168
           LA ++ NG I+    +   S+P + PT  +  SS W
Sbjct: 227 LACASENGTIHVFKISKQPSDPNSSPTSSVTVSSSW 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,353
Number of Sequences: 5004
Number of extensions: 29978
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)