Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D12
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 701 RVPVKXPXTALPRAXAXPYPVEKPVPFAVPVEKPVAYPRPCSCRQXL 561
           R P+  P ++ P     P P   P+  A+PV + +  P    C+  L
Sbjct: 431 RDPILTPPSSNP---VSPVPSPDPLDLAIPVRETLILPPRKRCKMIL 474


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 154 LKDSGSNFADGPAVLG-EIFINNFDSYE 234
           ++ SG N  DGPAV+   IF+ +    +
Sbjct: 47  IRPSGENATDGPAVVRVNIFVRSISKID 74


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 76  RNGNLLYHYVHVHLSAY 126
           RNG L+Y+ +  H++AY
Sbjct: 752 RNGALIYNILPPHVAAY 768


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 154 LKDSGSNFADGPAVL 198
           ++ SG N  DGPA++
Sbjct: 47  IRPSGENATDGPAIV 61


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 139 LFMSCMQRDARVRSDIKGYHF 77
           + +S + R+ RVRSD+K   F
Sbjct: 500 IVLSTILRNFRVRSDVKESEF 520


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -2

Query: 722 PTPXXARRVPVKXPXTALPRAXAXP-YPVE-KPVP 624
           P P  A+ VP      A+PR    P  PV   PVP
Sbjct: 765 PPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVP 799


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,001
Number of Sequences: 438
Number of extensions: 3835
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)