Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D10
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    32   0.11 
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    30   0.32 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    29   0.98 
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    28   1.7  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    27   3.0  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   6.9  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   6.9  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 693 WVCHGRKCLTSHACTCPFMDAVCLECERGVW--EHGGRV--FRCCF 568
           ++C G  CL     T P    VC +C R  +  E  G+V   RCCF
Sbjct: 17  FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCF 62


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 615 ERGVWEHGGRVFRCCFCQG-FLCEDDQFEHQASCQVLES-ETYKCQSCNRIGQYSCLR 448
           E  VWE     F C FC   F C  D + H   C+   + + Y+ +  N +  Y+C++
Sbjct: 47  EEEVWEDEVHEFCCLFCDSTFTCLKDLWSH---CKEAHNFDFYQVKQQNNLDFYACIK 101


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 537 FEHQASCQVLESETYKCQSCNRIGQYSCLRCKTCF 433
           FEH  +   L S +  C +C +I +     C  CF
Sbjct: 46  FEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCF 80


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -2

Query: 662 PMRAPALSWMPCAWSAKEVYGSTVAGFSGAVSAKDFCVKMTSLSIR--PHVKFWNRKPTS 489
           P   P+L W+   W  +E+  +   G   A  A   CV +  L ++  P    +N+   S
Sbjct: 379 PPSKPSLKWLATKWLRREIQKAGALGHDSAEDAL-ACVDLLKLKVKNGPAFGLFNQDFES 437

Query: 488 VNH 480
           + H
Sbjct: 438 IFH 440


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 489 CQSCNRIGQYSCLRCKTCFCEE 424
           C  C   G+Y+C  C T +C +
Sbjct: 102 CNVCGYWGKYACQNCGTSYCSK 123


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +1

Query: 652 ARMGCETFSTMTHPCLTEV--TY--STH 723
           A   CET  T+ HPC+ +   TY  STH
Sbjct: 65  ADRACETMKTLRHPCIIKYLSTYKSSTH 92


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 649 GARMGCETFSTMTHPCLTEVTYSTHHSH 732
           G    C+ FS + HPC    +  + H H
Sbjct: 175 GTVSSCDDFSYLVHPCRVRFSQWSKHLH 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,479
Number of Sequences: 5004
Number of extensions: 45191
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)