Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D10
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 584 FSGAVSAKDFCVKMTSLSIRPHVKFWNRKPTSVNHVT 474
           F G + +    +KM     RP   F+N K + V+ +T
Sbjct: 100 FLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTIT 136


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 489 CQSCNRIGQYSCLRCKTCFCEE 424
           C S    G+YSCL+    F  E
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKRE 240


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 489 CQSCNRIGQYSCLRCKTCFCEE 424
           C S    G+YSCL+    F  E
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKRE 240


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
 Frame = -1

Query: 672 CLTSHACTCPFMDAVCLECERGVWEHGGRVFRCCFCQGFLCEDDQFEHQASCQVLESETY 493
           C TS       + A     E+ +  +    F  C C  F   D +    A C+     T+
Sbjct: 714 CRTSGPRGVAIVSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTW 773

Query: 492 KCQS--CNRIG 466
              +  C+ +G
Sbjct: 774 NTNAVDCSGLG 784


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 542 SSSHKNPWQKQHRKTRPPCSH 604
           S S K+PW  +H      C+H
Sbjct: 166 SVSIKDPWFPRHASDLDNCNH 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,229
Number of Sequences: 438
Number of extensions: 3500
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)