Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D09
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    27   2.3  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   3.1  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   7.2  

>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 661 HWPPLVKVXGEPDESIFNSILI-TRSYQQXRQI 566
           HW PL+KV   P+ES+F S+ +   +Y++ R +
Sbjct: 57  HWVPLLKVE-FPNESMFQSVFMQLLNYRKYRSV 88


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 670 WLKHWPPLVKVXGEPDESIFNSILITRSYQQXRQIFAEYEALTGKDIED 524
           ++KHW P++K       S    I +   +   RQ+F  Y  L   D+ D
Sbjct: 114 FVKHWTPVIKAENADQLSSSGRIEL---FDLGRQVFERYYELFDTDVYD 159


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 371 EPLRDRPRGHQAGIPREVRQVPWRPGSLTIRKE 273
           +PL+ R R H+ G PR     P  P S T RKE
Sbjct: 10  KPLKKRSRAHRLGDPRFYCTYPDCPKSFT-RKE 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,659
Number of Sequences: 5004
Number of extensions: 42293
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)