Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_D06
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0389 + 3067808-3069121 31 0.77
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 30 1.8
12_01_0319 + 2440129-2440661,2440875-2440902 30 2.4
01_06_0409 + 29142409-29142870 29 5.4
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 28 7.2
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 28 7.2
02_05_0218 + 26860319-26862448 28 7.2
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 9.5
02_05_0219 + 26870970-26873117 28 9.5
>12_01_0389 + 3067808-3069121
Length = 437
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 700 PTVRIXPGPVPIRCVQKEDAAGRLQLPLLEAKGAAXKAWSRPSIEL 563
P R P P P+R V +D RL ++E +G +W PS +L
Sbjct: 80 PVERSTPSPPPLREVDDDDVVERL---VMEMEGGGGGSWCPPSCDL 122
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 628 QLPLLEAKGAAXKAWSRPSIELRTTSTPQPSTMCLPT 518
++P L A W + SIE+ T P PS+ LPT
Sbjct: 405 EIPTLGAAHGTFIQWPKHSIEINITPRPAPSSRPLPT 441
>12_01_0319 + 2440129-2440661,2440875-2440902
Length = 186
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 278 PPGVLPAAPRLAAGGEPADRRAHRLGTDQHGVLHAEPIVGAKREGAGV 135
PP AAPRL A R RLG+ G ++ + GA+ GA V
Sbjct: 53 PPPRAAAAPRLGAVSLSDIRFVRRLGSGDIGSVYLAEVKGARGGGAAV 100
>01_06_0409 + 29142409-29142870
Length = 153
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 688 IXPGPVPIRCVQKEDAAGRLQLPLLEAKGAAXKAWSRPSIE 566
+ P P+ + + +A GR QL + WSRP ++
Sbjct: 12 VPPRSAPLGRIWRVEAVGRRQLATTTTTAGGSRRWSRPDLD 52
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 586 WSRPSIELRTTSTPQPSTMCLPTSNT 509
WS PS R TS+P S C P + T
Sbjct: 495 WSPPSPHPRATSSPSTSPRCSPRAET 520
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2
Query: 276 SWSTSGRSTTGCGRRTSGPASTSAGNRPT 190
S +S S G GR T+ P+S+SAG RPT
Sbjct: 47 STPSSSSSAAGGGRPTT-PSSSSAGGRPT 74
>02_05_0218 + 26860319-26862448
Length = 709
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 691 RIXPGPVPIRCVQKEDAAGRLQLPLLEAKGAAXKA 587
++ P P PIR K AA Q LL+ AA KA
Sbjct: 325 QLHPSPPPIRGAMKSTAAEAAQQQLLDELAAAAKA 359
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -1
Query: 271 EYFRPLHDWLRAENQRTGEHIGWEPTNMEYCTPSQLSELNVKEPASSPATQQ 116
E F+PL L I P NME TP+ N++EPA +P+T+Q
Sbjct: 411 EDFKPLQHPLIPSTVVPDSSINNLPKNMEEPTPT-----NMEEPAPTPSTKQ 457
>02_05_0219 + 26870970-26873117
Length = 715
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 691 RIXPGPVPIRCVQKEDAAGRLQLPLLEAKGAAXKA 587
++ P P PIR K AA Q LL+ AA KA
Sbjct: 331 QLQPSPPPIRGAMKTTAAEAAQQQLLDELAAAAKA 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,730
Number of Sequences: 37544
Number of extensions: 344904
Number of successful extensions: 1268
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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