Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D04
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1320 - 26119720-26119950,26120393-26120481,26120604-26120688     32   0.59 
05_03_0205 - 10012256-10012588,10012676-10012826,10012909-100131...    29   4.1  
03_02_0992 + 13049871-13050449                                         29   4.1  
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049...    29   5.5  
10_01_0245 + 2566400-2567584                                           28   7.2  
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541...    28   9.6  

>08_02_1320 - 26119720-26119950,26120393-26120481,26120604-26120688
          Length = 134

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 22/58 (37%), Positives = 27/58 (46%)
 Frame = -1

Query: 623 AKTEQNRSGVDHKRSSGLVRT*RSASALVQPPGSPDRPTCLLEDGRQCRRRRSPAEPP 450
           A+TE + S     R  G  R   +A+A     GS   PTC   + R CRRR S  E P
Sbjct: 59  AQTEISSSSEGEARGGGSSRASAAAAARRMAIGSR-APTCTYNECRGCRRRCSVQEVP 115


>05_03_0205 -
           10012256-10012588,10012676-10012826,10012909-10013140,
           10013310-10013520,10013649-10013767,10013851-10014009,
           10014082-10014283,10014368-10014738,10014827-10014891,
           10014981-10015025,10015096-10015161,10015257-10015322,
           10015591-10015665,10015743-10015814,10016264-10016335,
           10016595-10016666,10017554-10017625,10017706-10017777,
           10023644-10023830,10024597-10024852
          Length = 965

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -1

Query: 521 PDRPTCLLEDGRQCRRRRSPAEPPGTVL 438
           P RP  LLE  R  RRRR PA  P   L
Sbjct: 20  PQRPVRLLELRRLLRRRRPPARLPARAL 47


>03_02_0992 + 13049871-13050449
          Length = 192

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
 Frame = -1

Query: 467 SPAEPPGTVLSS--RSRHCSFRLQCSRLFTCITTEA------E*ELRIC*SQSRFHLHPC 312
           +P  P G+       SRHC F  +  R   C TT A      E   R+C + +  H HP 
Sbjct: 109 TPLRPAGSRSGEGGSSRHCRFLHRRHRRRVCATTVAPPHPARERGNRLCTTSTSHHRHPP 168

Query: 311 LLR 303
           LLR
Sbjct: 169 LLR 171


>05_05_0311 -
           24004380-24004440,24004685-24004756,24004875-24004946,
           24005155-24005298,24005535-24005606,24006057-24006286
          Length = 216

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 578 NSSCGPHPTDSVPFSHLPPXISGNVPPLHY 667
           N  CG  PT S PF H PP    + P L Y
Sbjct: 178 NDLCGTIPT-SGPFDHFPPSSFASNPRLRY 206


>10_01_0245 + 2566400-2567584
          Length = 394

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 521 PDRPTCLLEDGRQCRRRRSPAEPPGTVLSSRSRH 420
           P  PT L+  G  CRR R  A  PG +   R+ H
Sbjct: 23  PPLPTQLIRAGAVCRRWRRIAAEPGFLRRYRAHH 56


>08_01_0619 +
           5412058-5413224,5413357-5413476,5413755-5413831,
           5414201-5414321
          Length = 494

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 494 DGRQCRRRRSPAEPP---GTVLSSRSRHCSFRLQCSRLFT 384
           DG + RRRR PAEPP   G V    +   + R +C+++ T
Sbjct: 108 DGWEARRRR-PAEPPRQRGHVSPPPALQAAMRKRCTQILT 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,965
Number of Sequences: 37544
Number of extensions: 385850
Number of successful extensions: 1049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)