Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D04
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132877-18|CAC70116.1|  362|Caenorhabditis elegans Hypothetical...    31   0.70 
AL032643-7|CAA21659.2|  362|Caenorhabditis elegans Hypothetical ...    31   0.70 
AF016430-5|AAB65373.1|  581|Caenorhabditis elegans Hypothetical ...    29   4.9  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AL132877-18|CAC70116.1|  362|Caenorhabditis elegans Hypothetical
           protein Y54E5A.1 protein.
          Length = 362

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 508 VGRSGLPGGCTKALADRYVRTSPELLLWSTPDRFCSVFALTPXYFRQRTSIALRNXSIQ- 684
           +G  GL           +  T+P  LLW     F   F     Y +  T + + N  IQ 
Sbjct: 135 LGEDGLDTDVPTTFEAEFFTTAPRKLLWLALQPFFYGFRPLIIYKKAPTDMEILNAIIQI 194

Query: 685 SFRQLILHF 711
           SF  LILHF
Sbjct: 195 SFDLLILHF 203


>AL032643-7|CAA21659.2|  362|Caenorhabditis elegans Hypothetical
           protein Y54E5A.1 protein.
          Length = 362

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 508 VGRSGLPGGCTKALADRYVRTSPELLLWSTPDRFCSVFALTPXYFRQRTSIALRNXSIQ- 684
           +G  GL           +  T+P  LLW     F   F     Y +  T + + N  IQ 
Sbjct: 135 LGEDGLDTDVPTTFEAEFFTTAPRKLLWLALQPFFYGFRPLIIYKKAPTDMEILNAIIQI 194

Query: 685 SFRQLILHF 711
           SF  LILHF
Sbjct: 195 SFDLLILHF 203


>AF016430-5|AAB65373.1|  581|Caenorhabditis elegans Hypothetical
           protein C05C8.6 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +1

Query: 547 LADRYVRTSPELLLWSTPDRFCSVF-ALTPXYFRQRTSIALRNXSIQSFRQLILH-FXKL 720
           LA  Y+ +S  +LLW+  DRF S + A++       T +   N     +++LI      +
Sbjct: 491 LAQPYIISSMRILLWNCDDRFYSYYVAVSKNQDEWVTIVDRTNEECHGWQELIFDPLPVV 550

Query: 721 YSRL---SDRISAVFS-VHFE 771
           Y RL    + I+ VF  VH E
Sbjct: 551 YIRLVGTRNSINEVFHVVHLE 571


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -1

Query: 629 VSAKTEQNRSGVDHKRSSGLVRT*RSASALVQPPGSPDRPTCLLEDGRQCRRRRSPAEPP 450
           V+AKT +       K  S   +  ++A+A  + P + ++PT   E+ +       P+E P
Sbjct: 362 VTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTEKPTATTEEVKSTTAAAKPSERP 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,847,261
Number of Sequences: 27780
Number of extensions: 313437
Number of successful extensions: 899
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)