Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D04
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   7.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   7.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   7.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 460 RNRLVRCCHRDHDTAH 413
           ++RL+RC H D + AH
Sbjct: 144 KSRLMRCLHHDIENAH 159


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 92  SIKSLGTNASDRRIRPISNTYTDLQINSNR 181
           SI+ L  N  D  IRP+ +T    +  +NR
Sbjct: 106 SIRGLQINHEDETIRPVFSTLQRAEYPTNR 135


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 557  AMSAQALNSSCGPHPTDSVP 616
            A +  +L     PHPTD+ P
Sbjct: 1376 ATTTNSLTMKVRPHPTDNAP 1395


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 604 GRVWTTRGVQGLCGHSDRRAL*YNHQEAQTDLRASWKTADSADAGGVQRNR 452
           G+  TT  +   CG  D+R +    +EAQ   + S+K A   D    +R R
Sbjct: 19  GKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 69


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 604 GRVWTTRGVQGLCGHSDRRAL*YNHQEAQTDLRASWKTADSADAGGVQRNR 452
           G+  TT  +   CG  D+R +    +EAQ   + S+K A   D    +R R
Sbjct: 19  GKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 69


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 633 GGKCENGTESVGCGPQEE 580
           GG      +  GCGP EE
Sbjct: 8   GGTMTEDYDMTGCGPPEE 25


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 633 GGKCENGTESVGCGPQEE 580
           GG      +  GCGP EE
Sbjct: 8   GGTMTEDYDMTGCGPPEE 25


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 633 GGKCENGTESVGCGPQEE 580
           GG      +  GCGP EE
Sbjct: 8   GGTMTEDYDMTGCGPPEE 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,021
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)