Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D03
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    33   0.062
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   7.1  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   9.4  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   9.4  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
 Frame = -3

Query: 734 RPETFXXXXXHXXLTXEQKYRDWGW---XXXXXXRSIVASKAXTPDXXXXXXXTLRGDDV 564
           RPET         +T ++ YR+WGW           +    A T              D 
Sbjct: 412 RPETVESLFILYRITRDEIYREWGWNIFVSFLRYSRLPGRDAFTCLDSVESKKVKDQRDK 471

Query: 563 QQSYFLAET-XXXXXXXXXXXXXXXXDEWVFNTEAHPLP-IKGKNPLY 426
            +S++ AET                   + FNTEAHP P I+    LY
Sbjct: 472 TESFWFAETLKYLYLLFEDDFSILPLTNYTFNTEAHPFPNIENNMDLY 519


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 583 PSGATTCNRATSSLKHLSTSTFCSRTT 503
           P  A+T +  TSS   LSTST C+ +T
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTST 397


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 360 CVLSASFLTFSLA*KLTQI 304
           C++S SFLTF++  KLT +
Sbjct: 493 CIVSVSFLTFTVYAKLTNL 511


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 633 CRVE-GGYTGLTNVYHQNPQGRRR 565
           CR E GGY GL +V   NP+  R+
Sbjct: 521 CRRENGGYGGLLSVVFHNPEDARQ 544


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 249 NLYAAGTMPLTANVPRPYKFELTFTLARTLKN 344
           N+ +   +   A    PYKFE+TF     LK+
Sbjct: 5   NILSVNVLNNPAKFSDPYKFEITFECLEPLKS 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,432
Number of Sequences: 5004
Number of extensions: 48391
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)