Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D03
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1078 - 30655212-30655289,30655614-30655811,30655916-306560...    52   5e-07
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666...    47   2e-05
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237...    30   2.4  
01_01_0461 - 3414127-3414867                                           30   2.4  
12_01_0193 + 1436165-1437247                                           29   5.6  
06_03_1418 - 30043911-30044046,30044412-30044701                       29   5.6  
11_01_0461 + 3569700-3572373,3572477-3572847                           28   7.4  

>04_04_1078 -
           30655212-30655289,30655614-30655811,30655916-30656086,
           30656172-30656252,30656464-30656565,30656671-30656779,
           30656900-30656965,30657566-30657630,30658386-30658475,
           30658952-30659123,30659831-30659943,30660046-30660219,
           30660300-30660347,30662041-30662205
          Length = 543

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 34/96 (35%), Positives = 41/96 (42%)
 Frame = -3

Query: 734 RPETFXXXXXHXXLTXEQKYRDWGWXXXXXXRSIVASKAXTPDXXXXXXXTLRGDDVQQS 555
           RPET         LT  + Y+DWGW           S+  +         T   D++ QS
Sbjct: 407 RPETVESLMYLWRLTGNKTYQDWGWDIFQAFEK--NSRIESGYVGLRDVNTGEKDNMMQS 464

Query: 554 YFLAETXXXXXXXXXXXXXXXXDEWVFNTEAHPLPI 447
           +FLAET                DEWVFNTEAHPL I
Sbjct: 465 FFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPLRI 500


>05_02_0107 -
           6667944-6668214,6668376-6668524,6668654-6668851,
           6668989-6669250,6669378-6670327,6670907-6671022,
           6671121-6671280
          Length = 701

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = -3

Query: 734 RPETFXXXXXHXXLTXEQKYRDWGWXXXXXXRSI--VASKAXTPDXXXXXXXTLRGDDVQ 561
           RPET         +T + KYR+WGW           V S   T           R D + 
Sbjct: 594 RPETVESLFVLYRITEDPKYREWGWQIFQAFEKYTRVDSGGYTSLDDVTSLPPPRRDKM- 652

Query: 560 QSYFLAETXXXXXXXXXXXXXXXXDEWVFNTEAHPLPI 447
           +++FL ET                D++VFNTEAHPLPI
Sbjct: 653 ETFFLGETLKYLYLLFGESNILPLDKYVFNTEAHPLPI 690


>02_05_0701 +
           31022485-31022648,31023569-31023611,31023712-31023777,
           31024007-31024062,31024091-31024190,31024290-31024472,
           31024953-31025001,31025089-31025169,31025209-31025268,
           31025394-31025514,31025612-31025693,31025783-31025868,
           31026011-31026111,31026246-31026387,31026488-31026638,
           31026710-31026937
          Length = 570

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 572 DDVQQSYFLAETXXXXXXXXXXXXXXXXDEWVFNTEAHPLPIK 444
           +D Q S+FL+ET                  ++F TE HPLPI+
Sbjct: 434 EDHQHSFFLSETCKYLFLLYDDSFLRNQ-NYIFTTEGHPLPIR 475


>01_01_0461 - 3414127-3414867
          Length = 246

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -1

Query: 580 SGATTCNRATSSLKHLSTSTFCSRTTLSFRSTSG--CSTLKLIR 455
           SG+ T + A+S+    S+++F S  +LSFRST    CS+++ ++
Sbjct: 126 SGSPTSSCASSTSSSSSSASFYSSYSLSFRSTQSPTCSSMRSLQ 169


>12_01_0193 + 1436165-1437247
          Length = 360

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 40  IMLPNSICTNAYKNHTSVTIPL-PFVICW 123
           ++LP  +CT  Y  H   T  L  F +CW
Sbjct: 230 VILPPEVCTPTYIFHADTTFSLGKFALCW 258


>06_03_1418 - 30043911-30044046,30044412-30044701
          Length = 141

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 568 TCNRATSSLKHLSTSTFCSRTTLSFRSTSGCSTLKLIRFQLKARIPCTAW 419
           T  ++  SL+ ++  + CSRT     S   C T   +R    A +  TAW
Sbjct: 18  TVTQSRQSLRKMTPKSQCSRTVKDETSHRVCQTPGQLRTNAHASVSNTAW 67


>11_01_0461 + 3569700-3572373,3572477-3572847
          Length = 1014

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 285 LPLGALFQLHTNFR*LLRYRERYKTRTKDTDHLTRRSPKVNYETIQ---NGCSTNNL 124
           +PL  +  L T    LL +R++++ ++       R  PKV+++ +    +G S +NL
Sbjct: 652 IPLACIVSLATGISVLLFWRKKHERKSMSLPSFGRNFPKVSFDDLSRATDGFSISNL 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,650
Number of Sequences: 37544
Number of extensions: 311434
Number of successful extensions: 602
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)