Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_D03
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78012-5|CAB01415.1|  590|Caenorhabditis elegans Hypothetical pr...    52   6e-07
Z73906-1|CAA98114.1|  540|Caenorhabditis elegans Hypothetical pr...    52   6e-07
Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical pr...    45   5e-05
U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical pr...    39   0.005
AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical...    29   5.1  

>Z78012-5|CAB01415.1|  590|Caenorhabditis elegans Hypothetical
           protein C52E4.5 protein.
          Length = 590

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 30/99 (30%), Positives = 37/99 (37%)
 Frame = -3

Query: 743 YXXRPETFXXXXXHXXLTXEQKYRDWGWXXXXXXRSIVASKAXTPDXXXXXXXTLRGDDV 564
           Y  RPE          LT +  YRDW W             +               +DV
Sbjct: 489 YIQRPEVIEGWFYLWRLTGKTMYRDWVWDAVQAIEKYCRVDSGFTGLQNVYNPKAGREDV 548

Query: 563 QQSYFLAETXXXXXXXXXXXXXXXXDEWVFNTEAHPLPI 447
            QS+FLAE                 D+WVFNTEAHP+P+
Sbjct: 549 MQSFFLAEFLKYAYLTFADESLISLDKWVFNTEAHPVPV 587



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = -2

Query: 660 EAVQALEKHCRVEGGYTGLTNVYHQNPQGRR 568
           +AVQA+EK+CRV+ G+TGL NVY  NP+  R
Sbjct: 517 DAVQAIEKYCRVDSGFTGLQNVY--NPKAGR 545


>Z73906-1|CAA98114.1|  540|Caenorhabditis elegans Hypothetical
           protein D2030.1 protein.
          Length = 540

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 30/100 (30%), Positives = 36/100 (36%)
 Frame = -3

Query: 743 YXXRPETFXXXXXHXXLTXEQKYRDWGWXXXXXXRSIVASKAXTPDXXXXXXXTLRGDDV 564
           Y  RPE           T ++KYR W W             A           +   DDV
Sbjct: 440 YILRPEVVETWFYLWRATKDEKYRQWAWDHVQNLEEYCKGTAGYSGIRNVYESSPEQDDV 499

Query: 563 QQSYFLAETXXXXXXXXXXXXXXXXDEWVFNTEAHPLPIK 444
           QQS+  AE                 D+WVFNTEAHP  I+
Sbjct: 500 QQSFLFAELFKYLYLIFSEDNILPLDQWVFNTEAHPFRIR 539



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 654 VQALEKHCRVEGGYTGLTNVYHQNPQ 577
           VQ LE++C+   GY+G+ NVY  +P+
Sbjct: 470 VQNLEEYCKGTAGYSGIRNVYESSPE 495


>Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical
           protein ZC410.3 protein.
          Length = 532

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
 Frame = -3

Query: 734 RPETFXXXXXHXXLTXEQKYRDWGWXXXXXXRSIV-ASKAXTPDXXXXXXXTLRGDDVQQ 558
           RPE          +T ++KY++WGW                           ++  D  +
Sbjct: 433 RPEAIEAWFYLYRVTKDKKYQEWGWKAFESIEKYAKVETGGYSSIDNVLRKKIKRRDKME 492

Query: 557 SYFLAETXXXXXXXXXXXXXXXXDE-WVFNTEAHPLPI 447
           S+FLAET                 + WV NTEAHPLPI
Sbjct: 493 SFFLAETLKYLYLLMADDQEILPLDRWVLNTEAHPLPI 530


>U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical
           protein T03G11.4 protein.
          Length = 584

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
 Frame = -3

Query: 734 RPETFXXXXXHXXLTXEQKYRDWGWXXXXXXRSIVA-SKAXTPDXXXXXXXTLRGDDVQQ 558
           RPE           T ++KY++WGW                           +R  D  +
Sbjct: 484 RPEAIEAWFYLYRFTGDKKYQEWGWSAFQAIEKYARIPTGGYSSISNVKQINVRFRDSME 543

Query: 557 SYFLAETXXXXXXXXXXXXXXXXDE-WVFNTEAHPLPI 447
           S+ L ET                 + WVF TE HPLPI
Sbjct: 544 SFLLGETFKYLYLLLGDDQTVLPLDKWVFTTEGHPLPI 581


>AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical
           protein F46E10.11 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 580 SGATTCNRATSSLKHLSTSTFCSRTTLSFRSTSGC 476
           SG +TCN  T++    STS++C +   ++R  +GC
Sbjct: 58  SGCSTCNCNTATC---STSSYCQQIRSNWRCINGC 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,622
Number of Sequences: 27780
Number of extensions: 276344
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)