Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C22
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    28   1.7  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    26   6.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   6.9  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   9.1  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.1  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 285  DVRHPLYGIAYIVSLVGLHLTHHCFFFVL 199
            D++  + G+  +  L+G HLTHH   +V+
Sbjct: 1154 DIKIKIGGLGVMAELMGKHLTHHDLIWVV 1182


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 207 FVL*KKKPNIPLSIRKHHIHYY 142
           FV   + PNIPL++  HH+  Y
Sbjct: 190 FVSFLENPNIPLTVLLHHVMLY 211


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 290 QNRLKWTDTIETNNNKINISNA 355
           QN+L W  T + +N  +NI NA
Sbjct: 384 QNQLLWPSTFDDDNFTLNIMNA 405


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 411 IKSNFLATCGEYKFINRDSLDILNLCPRFYLRAAK 515
           ++S     C ++ ++N D +DI++  P FY R  K
Sbjct: 13  LESQIDGVCPKF-YVNVDDIDIIHEPPEFYQRLKK 46


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 479  KFMPEILSPRCKSYVRGLRFICLTFASGSRRIVDI 583
            KF+ ++     + ++ GL+  CL F S S  +  I
Sbjct: 954  KFLEKVKQVTLQQFLEGLKIYCLPFFSSSNNLAVI 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,231
Number of Sequences: 5004
Number of extensions: 51773
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)