Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_C21
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 28 1.8
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 27 2.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 3.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.6
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 26 7.5
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 26 7.5
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 25 9.9
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 25 9.9
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.9
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 25 9.9
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 278 VLIVWTALRLKTHVFTAVAQVRLLFHLVLYVF--DYYLSLAVAVDRFRFHVFPLVQILF 448
+ + W +K+ AQ+ L F + ++VF Y + VA+ R F + +V LF
Sbjct: 213 ITLTWLLRCIKSQSGVQPAQISLAFWVFIFVFTHSYQVYSMVAIGRGSFSTWYVVSFLF 271
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 223 ELLIAKQNALAAHTQLWQNTVKRPFFYSENSHYTGSQLLHRXRGSXRGFYSDER 62
E++ AK+ A + ++W + P F S + S+L ++ + S G DER
Sbjct: 489 EIVPAKERAYLSCPKVWSKIINHPRFESFDIDDLCSKLKNKAKCSSSGVLLDER 542
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Frame = -1
Query: 379 IIEHIQNQVKQEPDLSNGCENVCLQPQ----SSPYYQNGHNDVNIVYYDQVSRPGPELLI 212
++ Q +Q P L +N+ P S P+Y + V Q R P ++
Sbjct: 65 LLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVLQPQQYRQLPPNMV 124
Query: 211 AKQNALAAHTQL 176
A NA H QL
Sbjct: 125 AATNAPQQHPQL 136
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 287 VWTALRLKTHVFTAVAQVRLLFHLVLYVFDYYL 385
+W++ + + V+ +A LFHLVL+V Y L
Sbjct: 1 MWSSSQNTSFVWVVIA-TGFLFHLVLFVLSYVL 32
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 352 KQEPDLSNGCENVCLQPQSSP 290
+ +P SNGC+NV L+ Q P
Sbjct: 21 RNDPLFSNGCKNVHLEAQLHP 41
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/58 (20%), Positives = 26/58 (44%)
Frame = -1
Query: 448 EKYLYERKDMEAEAVYSDSQRQIIIEHIQNQVKQEPDLSNGCENVCLQPQSSPYYQNG 275
EK+++E +++ A+ S ++ +I + +K EP L P ++ G
Sbjct: 494 EKFVWEPSTVKSNAILSATEAATLILSVDETIKNEPSQQPQAPQGALPPGAANRIMRG 551
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 355 VKQEPDLSNGCENVCLQPQSSPYYQNGHNDVNIVYYDQVSRPGPELLI 212
+K E + G CL + Y HNDV ++ +++ E+L+
Sbjct: 35 LKSEVEEEQGFSTPCLTHEGINYIYIHHNDVYLLALSKMNSDAMEMLV 82
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 412 EAVYSDSQRQIIIEHIQNQVKQEPDLSNGCENVCLQPQSSPYYQNGHNDVNIVY 251
E+ QR +++ ++ Q E L + C L P + P Y G ++I+Y
Sbjct: 338 ESYNPTEQRPLVVMQLRGQHILE-GLKDICRQDALDPFTMPSYLTGETGLSILY 390
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -1
Query: 469 IDIPVDDEKYLYERKDMEAEAVYSDSQRQIIIEHIQNQVKQEPDLSNGCENVCLQPQSS 293
+D+PVD KY K + D+ + I + +V + D S ++PQ++
Sbjct: 601 VDLPVDSSKYTLVGKTQSNSNLLQDNAEKHISKSNLEKVDVKGDTSPNSVEQGIEPQAA 659
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 334 SNGCENVCLQPQSSPYYQNGHNDVNIVYYDQVSRPGPEL 218
S+ C+NV ++ SSP +N +D + Y + PEL
Sbjct: 936 SSLCDNVLVR--SSPSPKNNFDDTVFISYTSIDYDSPEL 972
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 331 NGCENVCLQPQSSPYYQNGHNDVNIVYYDQVSRPGPELLIAKQNALAAHTQLW-QNTVKR 155
NG N + P+S PY N + ++N ++++ A++ +L+ ++ +R
Sbjct: 167 NGSSNEIVYPESMPYQTNLY-ELNNTLITAAMEIIKDVVLEDNEKAASYRKLYNESAARR 225
Query: 154 PFFYSENSHYTG 119
P F ++ TG
Sbjct: 226 PPFITQCDTATG 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,398
Number of Sequences: 5004
Number of extensions: 52731
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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