Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_C19
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 30 1.8
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757 30 1.8
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 30 1.8
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 29 5.5
09_03_0006 + 11426346-11426420,11426733-11427452 29 5.5
02_01_0503 + 3669758-3670059,3670351-3670870 29 5.5
02_05_1071 - 33876061-33877308,33877593-33877898 28 9.6
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 28 9.6
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 30.3 bits (65), Expect = 1.8
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = -1
Query: 571 CKVFLHLLDTDKESNIKAVCQLLKLSGLALDADCPTGMHATFERLRRRGSLPLVRAVLDL 392
C L ++ +D E+N++++ L+ L+AD M A E+ +R ++A L
Sbjct: 595 CSAHLSII-SDLEANVESLENELQEQSKRLEADIQEVMRAKVEQEQR-----AIKAEESL 648
Query: 391 RAARWGLADTSHQHVGGMNGGSDYVEGGFLADGHSL--TAEERAFLQ 257
R ARW A T+ + S V F A+ L +E A LQ
Sbjct: 649 RKARWNNATTAERLQEEFKMLSSQVSSAFSANEQLLMQARKEAAELQ 695
>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
Length = 817
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 400 LDLRAARWGLADTSHQHVGGMNGGSDYVEGGFLADGHSL-----TAEERAFLQSN 251
LD AA G AD S +H+ GG D +G + + H+L T F+Q+N
Sbjct: 342 LDAAAASPGDADGSRRHIVSFIGGIDLCDGRYDDENHTLFRDLDTTYRHDFMQNN 396
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 421 LPLVRAVLDLRAA--RWGLADTSHQHVGGMNGGSDYVEGGFLADGHSLTAE 275
LP RAVLDL AA W +H VG G D V + HSLT +
Sbjct: 40 LPTARAVLDLCAAPGGWVQVAVNHAPVGAFVVGVDLVPIRPIRGAHSLTED 90
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 553 LLDTDKESNIKAVCQLLKLSGLALDADCPTGMHATFERLR 434
LL+ + +++ +K G L P G+HA FER R
Sbjct: 359 LLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFERFR 398
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.7 bits (61), Expect = 5.5
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +2
Query: 242 RRQVALQEGALLGGQRVTVRQETALYVIRPAVHAANVLVRGVGEPPAGRAQVEHGAHERQ 421
RR AL+ R R+ T L + V L PP R V H +
Sbjct: 64 RRPPALRRCCAAWRHRTRKRRRTRLCSL--LVTGVVDLCSDSASPPVLRLAVGHRCPDSS 121
Query: 422 RPAPPEPLERRVH---PRRAVRVEGQTRQL 502
P+PP+P R H P A+ G+T L
Sbjct: 122 APSPPQPGALRWHRRPPSTALPPHGETAPL 151
>02_01_0503 + 3669758-3670059,3670351-3670870
Length = 273
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 401 HGAHERQRPAPPEPLERRVHPRRA 472
H AH Q PP P RR+ PR A
Sbjct: 8 HAAHRSQIEIPPRPPSRRLPPRTA 31
>02_05_1071 - 33876061-33877308,33877593-33877898
Length = 517
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 380 AGRAQVEHGAHERQRPAPPEPLERRVHPRRAVRVE 484
A A VE A ER R +PPE V RRA R E
Sbjct: 64 AAAAAVERWARERGRVSPPELRRDVVRLRRARRYE 98
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = -1
Query: 676 TSEENMRGXXMXLAEIYTQLEDSQG---GRIKTLGESLCKVFLHLLDTDKESNIKAVCQL 506
T EN L + +L + GR+ TL SLCK + K+ IK
Sbjct: 1499 TRAENAESKCTLLTDTNLELSEELSFLRGRVDTLENSLCKANQLKMSAAKDIGIKTKTIT 1558
Query: 505 LKLSGLALDADC 470
++ LAL+ +C
Sbjct: 1559 DLVAKLALEREC 1570
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,724,650
Number of Sequences: 37544
Number of extensions: 338475
Number of successful extensions: 1310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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