Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C18
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    32   0.11 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   5.3  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   9.3  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.3  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   9.3  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 592 YIITAGIVLWFVDAWQT*TAGEEITKVLNALIRFYDPLVYEII 720
           Y I+ G + W V AW+       I K+ +  I F+ PLV   I
Sbjct: 193 YSISYGTLAWSVVAWRNSLLFHSIDKITSLFIHFFPPLVLHTI 235


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 651 GGSCLPGVDK-PENNPSGDDVSSLKKQCGSDSSPWKCLQEDRG 526
           G SC    D  P   PS    S  KK C S   P  C QE +G
Sbjct: 222 GSSCCSKKDSSPSEKPSC--CSQEKKSCCSSKKPSCCSQEKKG 262


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 711 INKRIIKPDQCIKNFGDFFSGGSCLPGVDKPENNPSGDDVSSLKKQCGSDSSPWK 547
           + + +++    +    D  S G    GVDKPEN+  G      K Q G +S+  K
Sbjct: 365 VERSVLQMQALLDQLNDQLSFGKSPEGVDKPEND-EGLGSFLPKPQDGENSASLK 418


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 603 GDDVSSLKKQCGSDSSPWKCLQEDRGDVAFVSSADLSNFDASQYE 469
           GD+V  L  +  +    W  LQE   +V  + S D+   DAS +E
Sbjct: 107 GDNVVLLDGEHPNHGFGWISLQEAGLEVRLIPSKDIYYADASTFE 151


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 584 NDDTSSPLGLFSGLSTPGKHEPPEKKSPKFLMH*SG 691
           +DD ++ L  F GLS P      E++S   L+H SG
Sbjct: 16  SDDLANKLAAF-GLSQPNHSSLSEQQSTNSLLHGSG 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,056
Number of Sequences: 5004
Number of extensions: 64307
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)