Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_C18
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0265 + 24040689-24041051,24041210-24041457,24041845-240423... 32 0.59
04_04_0521 - 25880616-25882362,25883036-25883412 30 1.8
11_06_0265 - 21788531-21789798,21789914-21789947 30 2.4
09_02_0099 + 4265550-4265663,4266794-4267024,4267619-4267681,426... 29 3.2
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459... 29 4.2
11_03_0127 - 10408628-10409106,10409188-10409821 29 4.2
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 28 7.3
07_03_0201 - 15036103-15037329 28 9.6
04_04_1654 - 35075409-35075926,35076396-35078694 28 9.6
>04_04_0265 +
24040689-24041051,24041210-24041457,24041845-24042365,
24042433-24042968
Length = 555
Score = 31.9 bits (69), Expect = 0.59
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = -3
Query: 573 CGSDSSPWKCLQEDRGDVAFVSSADLSNFDASQYELLCVNRETGGRDTLSNYPTC---NI 403
CG + + W + + +A +S+ S+ + S +LC++ GR ++N C +
Sbjct: 456 CGDELARWSLTSDSKLHLAVNASSSSSSPETSNGGMLCLDVGDDGRSLVTNPCRCLSADN 515
Query: 402 AMAPSRTWLSAKDFLSDVSIAHTPLSLAQL 313
+ P W K S S+A T LAQL
Sbjct: 516 SCDPESQWF--KLVTSTRSVAATNTMLAQL 543
>04_04_0521 - 25880616-25882362,25883036-25883412
Length = 707
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 460 CEPRDGRP*HSVQLSY-L*HSDGSIQNLAISQGLFIRCLYCPHSTQLSTV 314
CE +G+P ++ L++ L H GSI+ AI + + + PH+ +++ V
Sbjct: 282 CEVMNGKPEYTDHLTHKLKHHPGSIEAAAIMEHILAGSAFMPHAQKVNEV 331
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -3
Query: 564 DSSPWKCLQEDR--GDVAFVSSADLSNFDASQYE 469
+S+PWK +++ G+ F+SS+ +F ASQYE
Sbjct: 337 NSNPWKWIEKKSLDGESIFISSSCNKSFAASQYE 370
>09_02_0099 +
4265550-4265663,4266794-4267024,4267619-4267681,
4267774-4268223
Length = 285
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 462 RATHIVKHQSLINQHSTQKRHRHDLP 539
+A H+V H ++N HST R D P
Sbjct: 62 KAKHLVNHIVIVNTHSTSNRKHVDFP 87
>12_02_0661 +
21644328-21644517,21644697-21644875,21644899-21645922,
21647108-21647262
Length = 515
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -3
Query: 651 GGSCLPGVDKPENNPSGDDVSSLKKQCGSDSSPWKCLQEDRGDVAFVSSADLSNF--DAS 478
GG+ PGV + DD S+ C +D + E+ +A +S D + D++
Sbjct: 162 GGTFAPGVQVALEEVAVDDHCSIDAPCYADLEMQQNPSENESHIAKLSERDKKSVLSDST 221
Query: 477 QYELLCVNRET 445
+YE+ ++ E+
Sbjct: 222 KYEVESIHNES 232
>11_03_0127 - 10408628-10409106,10409188-10409821
Length = 370
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 519 RHRHDLPEDISKDCCHFRIVSLMMIH 596
RHRHDLPE +D + L IH
Sbjct: 58 RHRHDLPETAMQDAAREAFLRLSSIH 83
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 592 YIITAGIVLWFVDAWQT*TAGEEITKVLNALIRFYDPLV 708
+++ + LWF + +T + GE+ + L++ R +DP +
Sbjct: 128 FLVCCRLKLWFSEVLETFSIGEKFVRFLSSGYRKFDPQI 166
>07_03_0201 - 15036103-15037329
Length = 408
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 504 HSTQKRHRHDLPEDISKDCCHFRIVSLMMIH 596
+S Q RH DLPE +D ++ L IH
Sbjct: 64 YSFQTRHHRDLPETAMQDAAQEALLRLSSIH 94
>04_04_1654 - 35075409-35075926,35076396-35078694
Length = 938
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 548 FQGLLSLPHCFFNDDT--SSPLGLFSGLST 631
F+G+ SL H F N+++ S P FSGL++
Sbjct: 105 FRGMASLRHAFLNNNSFRSIPADFFSGLTS 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,210,203
Number of Sequences: 37544
Number of extensions: 398896
Number of successful extensions: 943
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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