Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C18
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        50   3e-08
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        50   3e-08
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        50   3e-08
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 49.6 bits (113), Expect = 3e-08
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
 Frame = -3

Query: 729 APLYYLINKRIIKPDQCIKNFGDFFSGGSCLPGVDKPE--------NNPSGDD-VSSLKK 577
           AP+Y L  K +IK +       DFFSG SC PG             N  S +D +  + K
Sbjct: 509 APIYTLKRKGLIKSEN---EAADFFSG-SCAPGAPLDSKLCQQCVGNLASNNDRIRQVTK 564

Query: 576 QCGSDSSPWK-------CLQEDRGDVAFVSSADLSNFDASQYELLCVNRETGGRDTLSNY 418
              ++   ++       CL + +GDVAFV    LS       +L  +  + GGR  ++ +
Sbjct: 565 CKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEGVQSKDLALICPD-GGRAEINEW 623

Query: 417 PTCNIAMAPSRTWLS--AKDFLSDVSIAHTPLSLAQLLDTRTDLFNI 283
             CN+ + P R  LS  AK       + H  L+ + L   R DL ++
Sbjct: 624 ERCNLGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLLHL 670


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 49.6 bits (113), Expect = 3e-08
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
 Frame = -3

Query: 729 APLYYLINKRIIKPDQCIKNFGDFFSGGSCLPGVDKPE--------NNPSGDD-VSSLKK 577
           AP+Y L  K +IK +       DFFSG SC PG             N  S +D +  + K
Sbjct: 509 APIYTLKRKGLIKSEN---EAADFFSG-SCAPGAPLDSKLCQQCVGNLASNNDRIRQVTK 564

Query: 576 QCGSDSSPWK-------CLQEDRGDVAFVSSADLSNFDASQYELLCVNRETGGRDTLSNY 418
              ++   ++       CL + +GDVAFV    LS       +L  +  + GGR  ++ +
Sbjct: 565 CKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEGVQSKDLALICPD-GGRAEINEW 623

Query: 417 PTCNIAMAPSRTWLS--AKDFLSDVSIAHTPLSLAQLLDTRTDLFNI 283
             CN+ + P R  LS  AK       + H  L+ + L   R DL ++
Sbjct: 624 ERCNLGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLLHL 670


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 49.6 bits (113), Expect = 3e-08
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
 Frame = -3

Query: 729 APLYYLINKRIIKPDQCIKNFGDFFSGGSCLPGVDKPE--------NNPSGDD-VSSLKK 577
           AP+Y L  K +IK +       DFFSG SC PG             N  S +D +  + K
Sbjct: 509 APIYTLKRKGLIKSEN---EAADFFSG-SCAPGAPLDSKLCQQCVGNLASNNDRIRQVTK 564

Query: 576 QCGSDSSPWK-------CLQEDRGDVAFVSSADLSNFDASQYELLCVNRETGGRDTLSNY 418
              ++   ++       CL + +GDVAFV    LS       +L  +  + GGR  ++ +
Sbjct: 565 CKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEGVQSKDLALICPD-GGRAEINEW 623

Query: 417 PTCNIAMAPSRTWLS--AKDFLSDVSIAHTPLSLAQLLDTRTDLFNI 283
             CN+ + P R  LS  AK       + H  L+ + L   R DL ++
Sbjct: 624 ERCNLGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLLHL 670


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 531 RGDVAFVSSADLSNFDASQYELLC 460
           +GDVA    A L  FD   Y+ +C
Sbjct: 484 KGDVAGSVEALLDIFDTYTYDTIC 507


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 654  SGGSCLPGVDKPENNPSGDDVSSLK 580
            +GG+  P  + P+ N  G+D   +K
Sbjct: 1555 TGGTIAPARELPDVNGGGNDEDPMK 1579


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -3

Query: 489 FDASQYELLCVNRETGGRDTLSNYPTCNIAM 397
           FDA    ++C+N +   R+++ N       M
Sbjct: 287 FDAQTNSMICLNGQVLKRESIHNSSNARFLM 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,850
Number of Sequences: 438
Number of extensions: 4377
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)