Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_C15
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 91 1e-19
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 53 6e-08
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 29 1.0
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 28 1.4
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 7.3
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 26 7.3
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 9.6
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 9.6
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 25 9.6
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 9.6
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 91.5 bits (217), Expect = 1e-19
Identities = 53/130 (40%), Positives = 64/130 (49%)
Frame = -2
Query: 719 GXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKEQQ 540
G YYLSPP S A A F + P+ LK QQ
Sbjct: 340 GLSYYLSPPASFQDALIDPIHTLVYVFFTMFACA-LFSKLWIEVSGASPRDVAKQLKSQQ 398
Query: 539 MVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF 360
+VM GHR+ SM EL R IPTAA G +GAL+V +D LGA+GSGT +LL T IY Y+
Sbjct: 399 LVMAGHREGSMYKELKRIIPTAAWLSGAVVGALAVASDLLGALGSGTAVLLCTTTIYGYY 458
Query: 359 EIFVQGTSGD 330
E + GD
Sbjct: 459 EQLQKEIKGD 468
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 52.8 bits (121), Expect = 6e-08
Identities = 27/75 (36%), Positives = 42/75 (56%)
Frame = -2
Query: 551 KEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 372
KE Q+V+ G+R+ +M+ EL + IP AA + LSV+A A G G+L+A ++
Sbjct: 399 KENQLVIAGYREATMLKELEKIIPIAAKLSAFFVSILSVIAGIF-ASTFGVGVLIASALV 457
Query: 371 YQYFEIFVQGTSGDG 327
Y FE+ V + G
Sbjct: 458 YASFEMIVGANTSLG 472
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 726 GGRXXXLPVPAGVPXHTLHXTPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDV 565
GG L P G+ LH PVH ++Y + ++ +FS W++ + +DV
Sbjct: 343 GGLVYFLYPPLGLSEALLH--PVHTVIYTITLICITIYFSLLWMNATAGGPRDV 394
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 476 PSGCSGSVRGSWSCRGDRASPSA 544
PSG S+ GSW RG + P+A
Sbjct: 83 PSGGRSSIEGSWYVRGKKLGPAA 105
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -2
Query: 476 AAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF---EIFVQGTSGDGRHEHT 312
A + GL IGALSV+A + S I A+ YQ F IF+ G H++T
Sbjct: 116 AKIWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTYQLFITLGIFIAACINMGTHKYT 173
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 604 DLDRCVWLLSQRCGE 560
+LD+CVW L + C E
Sbjct: 378 ELDKCVWFLLKNCDE 392
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 277 DRCVQLRFYCRFCSESTSLGV 215
DRC++L YC C ++ G+
Sbjct: 326 DRCIELYKYCEKCGIKSAFGI 346
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 9.6
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 485 IPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYF---EIFVQGTSGDGRHE 318
I A + G+ IGALSVLA + + I V + YQ F IF+ G H+
Sbjct: 117 IMVAKIWTGIGIGALSVLAPGYQSETAPPSIRGTVVVTYQLFVTGGIFIAACINMGTHK 175
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 409 PMAPRKSASTDRAPMHSPPNAAAVGM*RFSSWI 507
PMA RK A T R + + G+ R SSW+
Sbjct: 102 PMATRKIAGTYRDAPDNSMQQTSTGVHRSSSWL 134
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 217 HLMMSIQSRNDNKNGAERSGPTAAIITRLXRAVCSCRPSP 336
H +QS ++N + + RS P T + + +PSP
Sbjct: 262 HFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPELKPSP 301
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 236 RAETTIKTELNAAVRLPLSLRDLXEQCAHAAHLRLFLGQRS 358
R + + + LN + P +DL E + R F GQ+S
Sbjct: 269 RKKRSERDTLNVSTEFPEETKDLSEDTKPSKQARRFFGQKS 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,274
Number of Sequences: 5004
Number of extensions: 55020
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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