Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_C15
(810 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 149 1e-35
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 149 1e-35
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 149 1e-35
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 148 3e-35
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 148 3e-35
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 148 3e-35
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 148 3e-35
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 148 3e-35
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 148 3e-35
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 72 2e-12
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 72 2e-12
BC031861-1|AAH31861.2| 328|Homo sapiens spermatogenesis and oog... 32 2.8
AY902244-1|AAW82617.1| 328|Homo sapiens newborn ovary helix loo... 32 2.8
AY884306-1|AAW78548.1| 217|Homo sapiens TEB2 protein. 32 2.8
AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens ... 32 2.8
AF492646-1|AAO85488.1| 546|Homo sapiens proline rich, vinculin ... 32 2.8
AB097023-1|BAC77376.1| 712|Homo sapiens putative NFkB activatin... 32 2.8
AB093555-1|BAC44839.1| 712|Homo sapiens TIR domain containing a... 32 2.8
AB086380-1|BAC55579.1| 712|Homo sapiens TICAM-1 protein. 32 2.8
AL158822-5|CAI39241.2| 328|Homo sapiens spermatogenesis and oog... 31 3.7
X81649-1|CAA57309.1| 850|Homo sapiens gastric mucin protein. 31 6.5
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein. 31 6.5
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 149 bits (361), Expect = 1e-35
Identities = 80/127 (62%), Positives = 85/127 (66%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES+ + A F + K LKE
Sbjct: 96 VGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 154
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 155 QQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 214
Query: 365 YFEIFVQ 345
YFEIFV+
Sbjct: 215 YFEIFVK 221
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 149 bits (361), Expect = 1e-35
Identities = 80/127 (62%), Positives = 85/127 (66%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES+ + A F + K LKE
Sbjct: 96 VGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 154
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 155 QQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 214
Query: 365 YFEIFVQ 345
YFEIFV+
Sbjct: 215 YFEIFVK 221
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 149 bits (361), Expect = 1e-35
Identities = 80/127 (62%), Positives = 85/127 (66%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES+ + A F + K LKE
Sbjct: 338 VGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 396
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 456
Query: 365 YFEIFVQ 345
YFEIFV+
Sbjct: 457 YFEIFVK 463
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 148 bits (358), Expect = 3e-35
Identities = 81/133 (60%), Positives = 87/133 (65%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES + + A F + K LKE
Sbjct: 77 VGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 135
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 136 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 195
Query: 365 YFEIFVQGTSGDG 327
YFEIFV+ S G
Sbjct: 196 YFEIFVKEQSEVG 208
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 148 bits (358), Expect = 3e-35
Identities = 81/133 (60%), Positives = 87/133 (65%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES + + A F + K LKE
Sbjct: 32 VGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 90
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 91 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 150
Query: 365 YFEIFVQGTSGDG 327
YFEIFV+ S G
Sbjct: 151 YFEIFVKEQSEVG 163
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 148 bits (358), Expect = 3e-35
Identities = 81/133 (60%), Positives = 87/133 (65%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES + + A F + K LKE
Sbjct: 218 VGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 276
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 277 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 336
Query: 365 YFEIFVQGTSGDG 327
YFEIFV+ S G
Sbjct: 337 YFEIFVKEQSEVG 349
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 148 bits (358), Expect = 3e-35
Identities = 81/133 (60%), Positives = 87/133 (65%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES + + A F + K LKE
Sbjct: 32 VGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 90
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 91 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 150
Query: 365 YFEIFVQGTSGDG 327
YFEIFV+ S G
Sbjct: 151 YFEIFVKEQSEVG 163
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 148 bits (358), Expect = 3e-35
Identities = 81/133 (60%), Positives = 87/133 (65%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES + + A F + K LKE
Sbjct: 338 VGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 396
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 456
Query: 365 YFEIFVQGTSGDG 327
YFEIFV+ S G
Sbjct: 457 YFEIFVKEQSEVG 469
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 148 bits (358), Expect = 3e-35
Identities = 81/133 (60%), Positives = 87/133 (65%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES + + A F + K LKE
Sbjct: 338 VGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 396
Query: 545 QQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 366
QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 456
Query: 365 YFEIFVQGTSGDG 327
YFEIFV+ S G
Sbjct: 457 YFEIFVKEQSEVG 469
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 72.1 bits (169), Expect = 2e-12
Identities = 30/36 (83%), Positives = 35/36 (97%)
Frame = -1
Query: 663 PVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 556
PVH ++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 358 PVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQ 393
Score = 52.8 bits (121), Expect = 1e-06
Identities = 32/78 (41%), Positives = 36/78 (46%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES+ + A F + K LKE
Sbjct: 338 VGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 396
Query: 545 QQMVMRGHRDNSMIHELN 492
QQMVMRGHRD SM+HELN
Sbjct: 397 QQMVMRGHRDTSMVHELN 414
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 72.1 bits (169), Expect = 2e-12
Identities = 30/36 (83%), Positives = 35/36 (97%)
Frame = -1
Query: 663 PVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 556
PVH ++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 358 PVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQ 393
Score = 54.8 bits (126), Expect = 3e-07
Identities = 33/79 (41%), Positives = 37/79 (46%)
Frame = -2
Query: 725 VXGXXYYLSPPESLXTHXXXXXXXXXXXXXXX*ALAPSFQRPGSMCLAPQPKMWRNXLKE 546
V G YYLSPPES+ + A F + K LKE
Sbjct: 338 VGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCA-FFSKTWIEVSGSSAKDVAKQLKE 396
Query: 545 QQMVMRGHRDNSMIHELNR 489
QQMVMRGHRD SM+HELNR
Sbjct: 397 QQMVMRGHRDTSMVHELNR 415
>BC031861-1|AAH31861.2| 328|Homo sapiens spermatogenesis and
oogenesis specific basic helix-loop-helix 1 protein.
Length = 328
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 440 TEPRCTVLRTRPPSGCSGSVRGSWSCRGDRASPSAVPSXCFATSLAEEPDTSIQ 601
+EP V R GC+GS+ G+ SC D A S P A ++AE P + ++
Sbjct: 6 SEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPK---APTVAEGPSSCLR 56
>AY902244-1|AAW82617.1| 328|Homo sapiens newborn ovary helix loop
helix protein.
Length = 328
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 440 TEPRCTVLRTRPPSGCSGSVRGSWSCRGDRASPSAVPSXCFATSLAEEPDTSIQ 601
+EP V R GC+GS+ G+ SC D A S P A ++AE P + ++
Sbjct: 6 SEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPK---APTVAEGPSSCLR 56
>AY884306-1|AAW78548.1| 217|Homo sapiens TEB2 protein.
Length = 217
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 440 TEPRCTVLRTRPPSGCSGSVRGSWSCRGDRASPSAVPSXCFATSLAEEPDTSIQ 601
+EP V R GC+GS+ G+ SC D A S P A ++AE P + ++
Sbjct: 8 SEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPK---APTVAEGPSSCLR 58
>AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ43684 fis, clone TBAES2001492. ).
Length = 203
Score = 31.9 bits (69), Expect = 2.8
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Frame = +2
Query: 404 RSRWPRGSRPALTEPRCTVLRT---RPPSGCSGSV----RGSWSCRGDRASPSAVPSXCF 562
RS WP GSRP + P T T P S CSGS G G+ V S C
Sbjct: 26 RSWWPLGSRPLASVPSTTWAPTPSASPSSSCSGSQGSRGHGRGHLEGEVLPSMGVVSLCT 85
Query: 563 ATSLAEEPDTSIQ 601
+EPD Q
Sbjct: 86 PN---QEPDAESQ 95
>AF492646-1|AAO85488.1| 546|Homo sapiens proline rich, vinculin and
TIR domain containing protein-B protein.
Length = 546
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 410 RWPRGSRPALTEPRCTVLRTRPPSGCSGSVRGSWSCRGDRASPSAVPS 553
R P G +P+ +++ P GC SW G+ ASP +PS
Sbjct: 83 RSPHGPSKLCDDPQASLVPEPVPGGCQEPEEMSWPPSGEIASPPELPS 130
>AB097023-1|BAC77376.1| 712|Homo sapiens putative NFkB activating
protein protein.
Length = 712
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 410 RWPRGSRPALTEPRCTVLRTRPPSGCSGSVRGSWSCRGDRASPSAVPS 553
R P G +P+ +++ P GC SW G+ ASP +PS
Sbjct: 222 RSPHGPSKLCDDPQASLVPEPVPGGCQEPEEMSWPPSGEIASPPELPS 269
>AB093555-1|BAC44839.1| 712|Homo sapiens TIR domain containing
adaptor inducing interferon-beta protein.
Length = 712
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 410 RWPRGSRPALTEPRCTVLRTRPPSGCSGSVRGSWSCRGDRASPSAVPS 553
R P G +P+ +++ P GC SW G+ ASP +PS
Sbjct: 222 RSPHGPSKLCDDPQASLVPEPVPGGCQEPEEMSWPPSGEIASPPELPS 269
>AB086380-1|BAC55579.1| 712|Homo sapiens TICAM-1 protein.
Length = 712
Score = 31.9 bits (69), Expect = 2.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 410 RWPRGSRPALTEPRCTVLRTRPPSGCSGSVRGSWSCRGDRASPSAVPS 553
R P G +P+ +++ P GC SW G+ ASP +PS
Sbjct: 222 RSPHGPSKLCDDPQASLVPEPVPGGCQEPEEMSWPPSGEIASPPELPS 269
>AL158822-5|CAI39241.2| 328|Homo sapiens spermatogenesis and
oogenesis specific basic helix-loop-helix 1 protein.
Length = 328
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 440 TEPRCTVLRTRPPSGCSGSVRGSWSCRGDRASPSAVPSXCFATSLAEEPDTSIQ 601
+EP V R GC+GS+ G+ SC D A S P A ++AE P + ++
Sbjct: 6 SEPYPEVSRIPTVRGCNGSLSGALSCCEDSARGSGPPK---APTVAEGPSSCLR 56
>X81649-1|CAA57309.1| 850|Homo sapiens gastric mucin protein.
Length = 850
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 464 RTRPPSGCSGSVRGSWSCRGDRASPSAVPSXCFATSLAEEPDTSIQVFEKKAQEPSMKST 643
RT P G + SV+ ++S SP VP+ ++ P TS+ + EPS S
Sbjct: 518 RTTPAPGTATSVKKTFST----PSPPPVPATSTSSMSTTAPGTSVVSSKPTPTEPSTSSC 573
Query: 644 XSRACT 661
CT
Sbjct: 574 LQELCT 579
>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
Length = 2448
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 464 RTRPPSGCSGSVRGSWSCRGDRASPSAVPSXCFATSLAEEPDTSIQVFEKKAQEPSMKST 643
RT P G + SV+ ++S SP VP+ ++ P TS+ + EPS S
Sbjct: 1522 RTTPAPGTATSVKKTFST----PSPPPVPATSTSSMSTTAPGTSVVSSKPTPTEPSTSSC 1577
Query: 644 XSRACT 661
CT
Sbjct: 1578 LQELCT 1583
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 464 RTRPPSGCSGSVRGSWSCRGDRASPSAVPSXCFATSLAEEPDTSIQVFEKKAQEPSMKST 643
RT P G + SV+ ++S SP VP+ ++ P TS+ + EPS S
Sbjct: 1895 RTTPAPGTATSVKKTFST----PSPPPVPATSTSSMSTTAPGTSVVSSKPTPTEPSTSSC 1950
Query: 644 XSRACT 661
CT
Sbjct: 1951 LQELCT 1956
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,045,813
Number of Sequences: 237096
Number of extensions: 2376591
Number of successful extensions: 10756
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10729
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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