Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C14
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    27   3.2  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    26   5.6  

>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 380 RRPAWCASEIPHRTAGASRSGGPR 451
           R PA  AS +P+RT  A RS  PR
Sbjct: 10  RHPASSASALPNRTNTARRSTSPR 33


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 440 GGPRPALRLRCRPSRSTPQ 496
           G PRP    RC+P  STP+
Sbjct: 115 GRPRPDFLARCQPFESTPK 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,613
Number of Sequences: 5004
Number of extensions: 29758
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)