Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C14
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0679 - 12875988-12876016,12876186-12876306,12877792-12877974     30   1.9  
02_01_0247 - 1632425-1632646,1632873-1632958,1633209-1633332,163...    29   3.4  
01_07_0026 + 40576826-40577114,40577210-40577354,40577736-405778...    29   5.9  
01_05_0070 - 17842347-17842643                                         29   5.9  
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183...    28   7.8  
02_05_1113 + 34207997-34208380                                         28   7.8  
01_06_1179 - 35161229-35162368                                         28   7.8  

>02_02_0679 - 12875988-12876016,12876186-12876306,12877792-12877974
          Length = 110

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 384 RRPGPCASTYTPRPHGDGLLNEIRADFT 301
           RR G  AS Y P P GDG L  +   FT
Sbjct: 15  RRHGRTASAYQPHPSGDGGLEVVPGPFT 42


>02_01_0247 -
           1632425-1632646,1632873-1632958,1633209-1633332,
           1633622-1633729,1634297-1634378,1634718-1634770,
           1634866-1634949,1635092-1635249,1635326-1635805,
           1636340-1636709
          Length = 588

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 299 RVKSARISFSRPSPWGRGV*VLAQGPGRRPAW 394
           RV  + +SF     W RGV V+A G G   +W
Sbjct: 25  RVVGSAVSFGGRGRWRRGVAVVAAGAGAEASW 56


>01_07_0026 +
           40576826-40577114,40577210-40577354,40577736-40577801,
           40578012-40578021
          Length = 169

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 346 SPWRRSAERNPSGLHPKFEL 287
           +PW RS+ R P+ +HP+F +
Sbjct: 115 NPWLRSSSRIPNRIHPEFNM 134


>01_05_0070 - 17842347-17842643
          Length = 98

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 693 ALGRVCAQAGSSDG-RXVGXGCGXVXGGRAXVTCGTRRDLLNAXPGRAHLPGGGVSTARL 517
           A G V   +GS +G   VG GC  + GG   +  G    +     G A L GGGV   RL
Sbjct: 17  AAGSVVVASGSVEGVAGVGGGCAELGGG-GRLGGG----VAGVDGGCAGLGGGGVGRRRL 71

Query: 516 G 514
           G
Sbjct: 72  G 72


>12_02_1280 -
           27517683-27517871,27517955-27518029,27518155-27518318,
           27518424-27518538,27518783-27519074,27519162-27519318,
           27519438-27519510,27520309-27520377,27520471-27520694,
           27520800-27520981,27521067-27522064,27522335-27522580
          Length = 927

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 507 QRCPGVRLTPHHQEDEHALEXH*ADPVAYHTLLXPARRPRXHIRTQXHAHHY 662
           QR P   L    +E +H  E   + P   H+     R P  H  +Q HA H+
Sbjct: 141 QRVPKSPLLTREKERKHKDEHRKSYPKDSHSKEQSRRSPSRHHSSQDHARHH 192


>02_05_1113 + 34207997-34208380
          Length = 127

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 741 CGLWRRDEVKSKSERAALGRVCAQAGSSDGRXVGXGCGXVXGGRAXVTCG 592
           CG  RR   +S+  R A    CA+ GS  G+  G         RA V  G
Sbjct: 67  CGRGRRRGPRSRPARTARRAACAEDGSGRGQHGGRRSQPGTARRAAVAAG 116


>01_06_1179 - 35161229-35162368
          Length = 379

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 470 CRPSRSTPQHTASALPRRA 526
           CRP  +TP+H A +LP RA
Sbjct: 57  CRPLPNTPRHGALSLPHRA 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,831
Number of Sequences: 37544
Number of extensions: 292908
Number of successful extensions: 854
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)