Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_C11
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0846 + 32173853-32173931,32174047-32174118,32174221-321744...    30   1.8  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    29   5.5  
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913...    29   5.5  
02_05_1167 - 34638709-34639104,34640653-34642158                       28   9.7  

>02_05_0846 +
           32173853-32173931,32174047-32174118,32174221-32174430,
           32174545-32174636
          Length = 150

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 332 TPRTCRGADGSWNVHMWHCQDDQGRC 409
           TPRT  G    W+  ++HC DD G C
Sbjct: 3   TPRTGGGLT-RWSTGLFHCMDDPGNC 27


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 245 ASSXCPGTXRSPSRASGGETYLRVSGASXTPRTCRGADGS 364
           A+   PG    P     GE  L++ G    P+  +G DGS
Sbjct: 282 ATDDMPGIPALPVSGRDGEAILQLIGGDVAPKDWQGGDGS 321


>01_05_0720 -
           24588623-24588658,24588888-24589196,24589449-24591366,
           24591412-24591693,24592027-24592328
          Length = 948

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 375 CTFQEPSAPRQVRGVXDAPDTRRYVSPPDA 286
           C F +PS PR+++ +  APD        DA
Sbjct: 571 CCFPKPSCPRRIKNLWSAPDEEPLDDDEDA 600


>02_05_1167 - 34638709-34639104,34640653-34642158
          Length = 633

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -2

Query: 479 PNVWKWTDANQKNRAXXXXXXXXXXXXGRPGSATCARSR-NHPLLDKCEE 333
           P+ + W DAN+K R              R  S+    S   HP++D  EE
Sbjct: 584 PSDYTWVDANEKKRRMKAKKAKNRRGSTRKQSSKSTSSEGGHPMMDGFEE 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,526
Number of Sequences: 37544
Number of extensions: 298464
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)